Pinned Loading

1. bulkRNAseq-ccle bulkRNAseq-ccle Public

   End-to-end R/Bioconductor workflow for CCLE Colon bulk RNA-seq analysisi: PCA, Clustering & DESeq2

2. VCF-annotation-pipeline VCF-annotation-pipeline Public

   A shell script for automated variant annotation and functional impact filtering using SnpEff, designed for clinical bioinformatics workflows.

   HTML

3. GEO-metadata-extractor GEO-metadata-extractor Public

   A Python script for automated extraction and classification of metadata from NCBI Gene Expression Omnibus (GEO) datasets.

   Python

4. ngs-bam-qc-pipeline ngs-bam-qc-pipeline Public

   A Python-based post-alignment quality control piepline for Next-Generation Sequencing (NGS) BAM files, designed for clinical and research genomics workflows.

   Python

5. Epigenetic-pipeline-for-gene-regulatory-network-exlporation Epigenetic-pipeline-for-gene-regulatory-network-exlporation Public

   Python

6. Clinical_report_based_on_VCF_data_and_ACMG_guidelines Clinical_report_based_on_VCF_data_and_ACMG_guidelines Public

   Jupyter Notebook