Discussions

• 2 You must be logged in to vote

  💬

  Tissue microarray - analysis

  Logan2k19 started Oct 20, 2025 in General

  

  

  0
• 1 You must be logged in to vote

  🙏

  Subsetting images in Giotto objects

  rbutleriii asked Jun 4, 2025 in Q&A · Unanswered

  

  

  0
• 1 You must be logged in to vote

  🙏

  How to properly subset by FOV

  rbutleriii asked Jan 12, 2024 in Q&A · Closed · Answered

  

  

  4
• 1 You must be logged in to vote

  🙏

  Low-Cell Tissue Filter Parameter in Visium FFPE Analysis

  LauYuXuan asked Apr 4, 2025 in Q&A · Unanswered

  

  

  0
• 1 You must be logged in to vote

  🙏

  Appropriate comparison for ICFs across slides

  rbutleriii asked Jan 20, 2025 in Q&A · Unanswered

  

  

  0
• 1 You must be logged in to vote

  🙏

  How to change Image Extend/cropping

  MustafaElshani asked Nov 13, 2024 in Q&A · Answered

  

  

  4
• 1 You must be logged in to vote

  💬

  Filter specific genes from the Giotto object

  IgLab-UNAV started Oct 14, 2024 in General

  

  

  2
• 1 You must be logged in to vote

  🙏

  Cell spatial location differs between sdimx/y and CenterX/Y_global_px

  rbutleriii asked Sep 27, 2024 in Q&A · Unanswered

  

  

  0
• 1 You must be logged in to vote

  💬

  Combine Multiple Samples

  marsdenl started Jun 30, 2024 in General · Closed

  

  

  2
• 2 You must be logged in to vote

  🙏

  DWLS deconvolution

  Umaarasu asked Aug 11, 2024 in Q&A · Unanswered

  

  

  0
• 1 You must be logged in to vote

  🙏

  Issues with installing Giotto

  wqcho00 asked Feb 7, 2024 in Q&A · Answered

  

  

  

  

  3
• 1 You must be logged in to vote

  🙏

  Batch adjusting and scaling the dataset

  rbutleriii asked Apr 26, 2024 in Q&A · Unanswered

  

  

  3
• 1 You must be logged in to vote

  💡

  Nanostring CosMx and AtoMx exported data

  jmodlis started Oct 26, 2023 in Ideas

  

  

  

  

  20
• 1 You must be logged in to vote

  🙏

  Giotto save and read

  Umaarasu asked Aug 21, 2023 in Q&A · Unanswered

  

  

  

  

  3
• 1 You must be logged in to vote

  🙏

  Comparison of spatial ligand receptor interacttions across groups

  rbutleriii asked Apr 20, 2024 in Q&A · Unanswered

  

  

  0
• 1 You must be logged in to vote

  💬

  Welcome to Giotto Discussions!

  RubD started Dec 9, 2020 in General

  

  

  

  

  11
• 1 You must be logged in to vote

  🙏

  annotateGiotto() function + celldex reference file for single cell analysis = Annotation Interrupted

  tsoruu asked Sep 13, 2023 in Q&A · Unanswered

  

  

  2
• 1 You must be logged in to vote

  🙏

  Choosing a max Delaunay distance

  rbutleriii asked Jan 9, 2024 in Q&A · Answered

  

  

  1
• 1 You must be logged in to vote

  💬

  When will the new giotto suite be released?

  chrkuo started Sep 9, 2023 in General

  

  

  0
• 1 You must be logged in to vote

  💬

  Error in Spatial grid

  Umaarasu started Aug 26, 2023 in General

  

  

  3
• 1 You must be logged in to vote

  🙏

  Cell proximity enrichment for features?

  lima1 asked May 24, 2023 in Q&A · Unanswered

  

  

  2
• 1 You must be logged in to vote

  💬

  Rotate 2D spatial plot

  millerkaplanlab started May 18, 2023 in General

  

  

  1
• 1 You must be logged in to vote

  💬

  Error in getSpatialDataset

  Umaarasu started May 4, 2023 in General · Closed

  

  

  

  

  4
• 1 You must be logged in to vote

  🙏

  joinGiottoObjects memory run out

  StanislavBratchikov asked Apr 27, 2023 in Q&A · Unanswered

  

  

  0
• 1 You must be logged in to vote

  🙏

  SpatialDWLS analysis

  vwtlin asked Feb 28, 2023 in Q&A · Answered

  

  

  

  

  11