zebrafish_mutant_analysis

Repo for identifying biomarkers of altered brain dynamics in zebrafish mutant models.

Modules

'admin_functions.py' - useful administrative functions useful

'IS.py' - module for Bayesian importance sampling approach for loglikelihood ratio testing of power law vs lognormal distribution

'criticality.py' - module for the estimation of avalanches and calculation of critical statistics

'trace_analyse.py' - module containing classes and functions for the analysis of single cell and population firing statistics

Notebooks

'THAP12.ipynb' - analyses of macroscale brain dynamics in THAP12 mutants

'foxg1_criticality.ipynb' - critical avalanche statistics in FOXG1 mutants

'foxg1_spike_stats.ipynb' - spiking activity in FOXG1 mutants