seizure_dynamics

Repo for calculating eigenspectra, population smoothness and velocity in spontaneous dynamics.

What is this repo for?

• the analysis of seizure dynamics using dimensionality reduction and simulations
• the visualisation of state trajectories
• the analysis of metastable dynamics

What does this repo contain?

• Modules contain functions for the analysis and simulation of eigenpectra and metastability
• Accompanying ipynotebooks demonstrate how to use the modules

Modules

'admin_functions.py' - useful administrative functions useful

'dynamics.py' - calculates eigenspectra in empirical data and simulates eigenspectra power laws

'LCE.py' - functions for performing lagged coordinate embedding

'metastability.py' - functions for calculating the number of metastable states and state transition dynamics

Notebooks

'eigenspectra.ipynb' - calculates eigenspectra in empirical data and simulates eigenspectra power laws

'metastability.ipynb' - calculating the number of metastable states and state transition dynamics