Analysis

Notes about Analysis Scripts

Bootstrapping on Blanca

Luke has added a python script to perform bootstrapping on Blanca using the qsub command. It creates a shell script and a template matlab script. It is easy to modify by just changing the file name and path information at the top of the script. The fields should be fairly self-evident. After all of the parallel bootstrap samples have completed, run the collate script to integrate all of the samples and write out z, p, and p < .001 unc and q < 0.05 fdr corrected images. The scripts run really fast and take approximately 10-20 min to run 5k samples with an SVM. Though this may be quite variable if you are using different algorithms. It is easy to add more parallel jobs and decrease the number of sample each job runs.