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update cluster numbers #13

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update cluster numbers #13

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2 changes: 1 addition & 1 deletion cellset_extraction.R
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Expand Up @@ -43,7 +43,7 @@ get_cellset_cell_ids <-
#' Get the cell_ids for many cellsets
#'
#' The cellset coordinates follow the convention shown in get_cellset_cell_ids,
#' so if you want the cell_ids of louvain clusters 13 and 14, you should input
#' so if you want the cell_ids of louvain clusters 12 and 13, you should input
#' list(c(1, 13), c(1,14)).
#'
#' @param cellsets list parsed json cellset object
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2 changes: 1 addition & 1 deletion remove_cellsets.Rmd
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Expand Up @@ -32,7 +32,7 @@ cellsets <- jsonlite::read_json(file.path(data_dir, "cellsets.json"))


Create list of cellset coordinates to extract. Follow `get_cellset_cell_ids` docs
for reference. In this example, we will remove louvain clusters (index 1) 13 and 14,
for reference. In this example, we will remove louvain clusters (index 1) 12 and 13,

```{r}
cellsets_to_extract <- list(c(1,13), c(1,14))
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