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1. aspralign aspralign Public

   Algebraic Structural Pseudoknot RNA Alignment

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2. TARNAS TARNAS Public

   TrAnslator for RNA Secondary structure formats

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3. TaxonClassifier TaxonClassifier Public

   Evaluation Framework of Comparison Methods that uses Automatic Taxonomy Reconostruction via Agglomerative Clustering

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4. STAlign STAlign Public

   STAlign builds Structural Trees of 3D biomolecules (RNA, Proteins) and computes the Algebraic Structural Alignment (ASA) Distance.

   Java 2

5. sernalign sernalign Public

   SERNAlign - Structural sEquence RNA secondary structure Alignment

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6. triplematcher triplematcher Public

   Detect a possible pattern of triple helix in a secondary structure

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