Scs

dockerPython/Dockerfile → children-society/python3-notebook/Dockerfile

@@ -1,4 +1,4 @@
-FROM jupyter/minimal-notebook
+FROM jupyter/minimal-notebook:9e056d61b7a5
 
 COPY requirements.txt /tmp/
 RUN pip install --requirement /tmp/requirements.txt

children-society/python3-notebook/readme.md

@@ -0,0 +1,5 @@
+This folder has the Python notebook docker files for DKSG's work with the Singapore Children's Society.
+
+Events:
+
+* April 2017, DataDive

children-society/python3-notebook/requirements.txt

@@ -0,0 +1,10 @@
+matplotlib==2.0.0
+numpy==1.12.0
+pandas==0.19.2
+plotly==2.0.5
+scikit-learn==0.18.1
+scipy==0.19.0
+spacy==1.7.2
+nltk==3.2.2
+gensim==1.0.1
+seaborn==0.7.1

children-society/r-notebook/.dockerignore

@@ -0,0 +1,2 @@
+# Documentation
+README.md

children-society/r-notebook/Dockerfile

@@ -0,0 +1,54 @@
+# Copyright (c) Jupyter Development Team.
+# Distributed under the terms of the Modified BSD License.
+FROM jupyter/minimal-notebook:9e056d61b7a5
+
+MAINTAINER Jupyter Project <jupyter@googlegroups.com>
+
+USER root
+
+# R pre-requisites
+RUN apt-get update && \
+    apt-get install -y --no-install-recommends \
+    fonts-dejavu \
+    gfortran \
+    gcc && apt-get clean && \
+    rm -rf /var/lib/apt/lists/*
+
+USER $NB_USER
+
+# R packages
+RUN conda config --add channels r && \
+    conda install --quiet --yes \
+    'r-base=3.3.2' \
+    'r-irkernel=0.7*' \
+    'r-plyr=1.8*' \
+    'r-devtools=1.12*' \
+    'r-tidyverse=1.0*' \
+    'r-shiny=0.14*' \
+    'r-rmarkdown=1.2*' \
+    'r-forecast=7.3*' \
+    'r-rsqlite=1.1*' \
+    'r-reshape2=1.4*' \
+    'r-nycflights13=0.2*' \
+    'r-caret=6.0*' \
+    'r-rcurl=1.95*' \
+    'r-crayon=1.3*' \
+    'r-psych=1.6*' \
+    'r-dplyr=0.5*' \
+    'r-igraph=1.0*' \
+    'r-tm=0.6*' \
+    'r-magrittr=1.5' \
+    'r-stringr=1.1*' \
+    'r-shinydashboard=0.5*' \
+    'r-SnowballC=0.5*' \
+    'r-NLP=0.1*' \
+    'r-DT=0.2' \
+    'r-ggplot2=2.2*' \
+    'r-RColorBrewer=1.1*' \
+    'r-broom=0.4*' \
+    'r-MASS=7.3*' \
+    'r-randomforest=4.6*' && conda clean -tipsy
+
+RUN conda config --add channels BIMSBbioinfo && \
+    conda install --quiet --yes \
+    'r-plotly=4.5.2' && conda clean -tipsy

children-society/r-notebook/README.md

@@ -0,0 +1,5 @@
+This folder has the R notebook docker files for DKSG's work with the Singapore Children's Society.
+
+Events:
+
+* April 2017, DataDive

children-society/rstudio/Dockerfile

@@ -0,0 +1,137 @@
+FROM rocker/rstudio:3.3.3
+
+RUN R -e 'install.packages("devtools")'
+
+
+RUN R -e 'library(devtools); \
+          install_version("ggplot2", "2.2.1");'
+
+RUN R -e 'library(devtools); \
+          install_version("dplyr", "0.5.0");'
+
+RUN R -e 'library(devtools); \
+          install_version("tidyr", "0.6.1");'
+
+RUN R -e 'library(devtools); \
+          install_version("data.table", "1.10.4");'
+
+RUN R -e 'library(devtools); \
+          install_version("leaflet", "1.1.0");'
+
+RUN R -e 'library(devtools); \
+          install_version("shiny", "1.0.1", repos = "https://cloud.r-project.org/");'
+
+RUN R -e 'library(devtools); \
+          install_version("vcd", "1.4-3");'
+
+RUN R -e 'library(devtools); \
+          install_version("plotly", "4.5.2");'
+
+RUN R -e 'library(devtools); \
+          install_version("plyr", "1.8.4");'
+
+RUN R -e 'library(devtools); \
+          install_version("rmarkdown", "1.3");'
+
+RUN R -e 'library(devtools); \
+          install_version("forecast", "8.0");'
+
+RUN R -e 'library(devtools); \
+          install_version("RSQLite", "1.1-2");'
+
+RUN R -e 'library(devtools); \
+          install_version("reshape2", "1.4.2");'
+
+RUN R -e 'library(devtools); \
+          install_version("nycflights13", "0.2.2");'
+
+RUN R -e 'library(devtools); \
+          install_version("caret", "6.0-73");'
+
+RUN R -e 'library(devtools); \
+          install_version("RCurl", "1.95-4.8");'
+
+RUN R -e 'library(devtools); \
+          install_version("crayon", "1.3.2");'
+
+RUN R -e 'library(devtools); \
+          install_version("psych", "1.7.3.21");'
+
+RUN R -e 'library(devtools); \
+          install_version("igraph", "1.0.1");'
+
+RUN R -e 'library(devtools); \
+          install_version("NLP", "0.1-10");'
+
+RUN R -e 'library(devtools); \
+          install_version("tm", "0.7-1");'
+
+RUN R -e 'library(devtools); \
+          install_version("magrittr", "1.5");'
+
+RUN R -e 'library(devtools); \
+          install_version("quanteda", "0.9.9-24");'
+
+RUN R -e 'library(devtools); \
+          install_version("stringr", "1.2.0");'
+
+RUN R -e 'library(devtools); \
+          install_version("shinydashboard", "0.5.3");'
+
+RUN R -e 'library(devtools); \
+          install_version("SnowballC", "0.5.1");'
+
+RUN R -e 'library(devtools); \
+          install_version("DT", "0.2");'
+
+RUN R -e 'library(devtools); \
+          install_version("RColorBrewer", "1.1-2");'
+
+RUN R -e 'library(devtools); \
+          install_version("broom", "0.4.2");'
+
+RUN R -e 'library(devtools); \
+          install_version("MASS", "7.3-45");'
+
+RUN R -e 'library(devtools); \
+          install_version("randomForest", "4.6-12");'
+
+RUN R -e 'library(devtools); \
+          install_version("wordcloud", "2.5");'
+
+RUN R -e 'library(devtools); \
+          install_version("likert", "1.3.5");'
+
+RUN echo 'deb http://ftp.ca.debian.org/debian unstable main' >> /etc/apt/sources.list
+RUN apt-get update
+RUN apt-get install -y libxml2-dev
+
+RUN R -e 'library(devtools); \
+          install_version("tidyverse", "1.1.1");'
+
+RUN R -e 'library(devtools); \
+          install_github("exploratory-io/exploratory_func");'
+
+RUN R -e 'library(devtools); \
+          install_version("corrplot", "0.77");'
+
+RUN R -e 'library(devtools); \
+          install_version("ggdendro", "0.1-20");'
+
+RUN R -e 'library(devtools); \
+          install_version("spatstat", "1.50-0");'
+
+RUN R -e 'library(devtools); \
+          install_version("visNetwork", "1.0.3");'
+
+RUN R -e 'library(devtools); \
+          install_version("googleVis", "0.6.2");'
+
+RUN R -e 'library(devtools); \
+          install_version("topicmodels", "0.2-5");'
+
+RUN R -e 'library(devtools); \
+          install_version("LDAvis", "0.3.2");'
+
+RUN R -e 'library(devtools); \
+          install_version("fields", "8.10");'

ojoy/r-notebook/Dockerfile

@@ -0,0 +1,40 @@
+# Copyright (c) Jupyter Development Team.
+# Distributed under the terms of the Modified BSD License.
+FROM jupyter/minimal-notebook:9e056d61b7a5
+
+MAINTAINER Jupyter Project <jupyter@googlegroups.com>
+
+USER root
+
+# R pre-requisites
+RUN apt-get update && \
+    apt-get install -y --no-install-recommends \
+    fonts-dejavu \
+    gfortran \
+    gcc && apt-get clean && \
+    rm -rf /var/lib/apt/lists/*
+
+USER $NB_USER
+
+# R packages
+RUN conda config --add channels r && \
+    conda install --quiet --yes \
+    'r-base=3.3.2' \
+    'r-irkernel=0.7*' \
+    'r-plyr=1.8*' \
+    'r-devtools=1.12*' \
+    'r-tidyverse=1.0*' \
+    'r-shiny=0.14*' \
+    'r-rmarkdown=1.2*' \
+    'r-forecast=7.3*' \
+    'r-rsqlite=1.1*' \
+    'r-reshape2=1.4*' \
+    'r-nycflights13=0.2*' \
+    'r-caret=6.0*' \
+    'r-rcurl=1.95*' \
+    'r-crayon=1.3*' \
+    'r-randomforest=4.6*' && conda clean -tipsy
+
+RUN conda config --add channels BIMSBbioinfo && \
+    conda install --quiet --yes \
+    'r-plotly=4.5.2' && conda clean -tipsy

ojoy/r-notebook/README.md

@@ -0,0 +1,5 @@
+This folder has the R notebook docker files for DKSG's work with the O'Joy.
+
+Events:
+
+* April 2017, DataDive

ojoy/rstudio/Dockerfile

@@ -0,0 +1,27 @@
+FROM rocker/rstudio:3.3.3		
+
+RUN R -e 'install.packages("devtools")'
+
+
+RUN R -e 'library(devtools); \
+          install_version("ggplot2", "2.2.1");'
+
+
+RUN R -e 'library(devtools); \
+          install_version("dplyr", "0.5.0");'
+
+RUN R -e 'library(devtools); \
+          install_version("tidyr", "0.6.1");'
+
+RUN R -e 'library(devtools); \
+          install_version("data.table", "1.10.4");'
+
+RUN R -e 'library(devtools); \
+          install_version("leaflet", "1.1.0");'
+
+RUN R -e 'library(devtools); \ 
+          install_version("shiny", "1.0.1", repos = "https://cloud.r-project.org/");'
+
+RUN R -e 'library(devtools); \
+          install_version("vcd", "1.4-3");'
+

python3-notebook/Dockerfile

@@ -0,0 +1,6 @@
+FROM jupyter/minimal-notebook:9e056d61b7a5
+
+COPY requirements.txt /tmp/
+RUN pip install --requirement /tmp/requirements.txt
+COPY . /tmp/
+

python3-notebook/requirements.txt

@@ -0,0 +1,6 @@
+matplotlib==2.0.0
+numpy==1.12.0
+pandas==0.19.2
+plotly==2.0.5
+scikit-learn==0.18.1
+scipy==0.19.0

r-notebook/.dockerignore

@@ -0,0 +1,2 @@
+# Documentation
+README.md

r-notebook/Dockerfile

@@ -0,0 +1,40 @@
+# Copyright (c) Jupyter Development Team.
+# Distributed under the terms of the Modified BSD License.
+FROM jupyter/minimal-notebook
+
+MAINTAINER Jupyter Project <jupyter@googlegroups.com>
+
+USER root
+
+# R pre-requisites
+RUN apt-get update && \
+    apt-get install -y --no-install-recommends \
+    fonts-dejavu \
+    gfortran \
+    gcc && apt-get clean && \
+    rm -rf /var/lib/apt/lists/*
+
+USER $NB_USER
+
+# R packages
+RUN conda config --add channels r && \
+    conda install --quiet --yes \
+    'r-base=3.3.2' \
+    'r-irkernel=0.7*' \
+    'r-plyr=1.8*' \
+    'r-devtools=1.12*' \
+    'r-tidyverse=1.0*' \
+    'r-shiny=0.14*' \
+    'r-rmarkdown=1.2*' \
+    'r-forecast=7.3*' \
+    'r-rsqlite=1.1*' \
+    'r-reshape2=1.4*' \
+    'r-nycflights13=0.2*' \
+    'r-caret=6.0*' \
+    'r-rcurl=1.95*' \
+    'r-crayon=1.3*' \
+    'r-randomforest=4.6*' && conda clean -tipsy
+
+RUN conda config --add channels BIMSBbioinfo && \
+    conda install --quiet --yes \
+    'r-plotly=4.5.2' && conda clean -tipsy