Enable ephemeral containers

[GlassOfWhiskey]

No description provided.

[LanderOtto]

Suggested change

	location=location if self.ephemeral else get_inner_location(location),
	location=get_inner_location(location),

[LanderOtto]

Suggested change

	sif_exists = returncode == 1
	sif_exists = returncode == 0

[codecov]

❌ 3 Tests Failed:

Tests completed	Failed	Passed	Skipped
992	3	989	1

View the top 3 failed test(s) by shortest run time

common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::dockeroutputdir

Stack Traces | 0.104s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  thing:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: thing
    class: File
    size: 0
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/docker-output-dir.cwl
label: dockeroutputdir
id: 103
doc: Test dockerOutputDirectory
tags:
- docker
- command_line_tool
line: '1410'

common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::initial_workdir_output

Stack Traces | 0.316s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/initialworkdirrequirement-docker-out-job.json
output:
  OUTPUT:
    checksum: sha1$aeb3d11bdf536511649129f4077d5cda6a324118
    location: ref.fasta
    secondaryFiles:
    - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      location: ref.fasta.fai
      class: File
      size: 0
    class: File
    size: 12010
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/initialworkdirrequirement-docker-out.cwl
label: initial_workdir_output
id: 98
doc: Test output of InitialWorkDir
tags:
- docker
- initial_work_dir
- command_line_tool
line: '1328'

common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::initial_workdir_secondary_files_expr

Stack Traces | 1.05s run time

CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/search-job.json
output:
  outfile:
    class: File
    checksum: sha1$e2dc9daaef945ac15f01c238ed2f1660f60909a0
    location: result.txt
    size: 142
  indexedfile:
    location: input.txt
    class: File
    checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
    secondaryFiles:
    - location: input.txt.idx1
      class: File
      checksum: sha1$1f6fe811644355974cdd06d9eb695d6e859f3b44
      size: 1500
    - location: input.idx2
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.txt.idx3
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.txt.idx4
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.txt.idx5
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.idx6.txt
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      class: File
      location: input.txt.idx7
      size: 0
    - checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
      class: File
      location: hello.txt
      size: 13
    - class: Directory
      listing:
      - basename: index
        checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
        class: File
        location: index
        size: 0
      location: input.txt_idx8
    size: 1111
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/search.cwl#main
label: initial_workdir_secondary_files_expr
id: 55
doc: Test InitialWorkDirRequirement linking input files and capturing secondaryFiles
  on input and output. Also tests the use of a variety of parameter references and
  expressions in the secondaryFiles field.
tags:
- initial_work_dir
- inline_javascript
- command_line_tool
line: '551'

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