Bump isort from 7.0.0 to 8.0.0 by dependabot[bot] · Pull Request #207 · alpha-unito/streamflow-postgresql

dependabot · 2026-02-20T10:56:28Z

Bumps isort from 7.0.0 to 8.0.0.

Release notes

8.0.0

Changes

Update CHANGELOG for version 8.0.0 (#2460) @DanielNoord

Fix edge case of __future__ import. (#2458) @skv0zsneg

Fix the Plone profile to be compatible with black (#2457) @ale-rt

typo fix (#2450) @jsta

Remove the setuptools plugin (#2427) @DanielNoord

Turn some warnings into errors in test suite (#2449) @DanielNoord

chore: replace black with ruff in clean.sh (#2448) @joao-faria-dev

feat!: remove old finders flag and legacy finder logic (#2446) @joao-faria-dev

Fix whitespace insensitive check triggering on tabs (#2437) @robsdedude

Fix line separator detection not considering form feed as white space (#2436) @robsdedude

Fix #1964: lines_before_import sometimes ignored (#1965) @robsdedude

Remove reference to 3.9 in README (#2434) @DanielNoord

🚀 Features

Ensure multiprocessing.Pool is always closed and joined (#2442) @DanielNoord

👷 Continuous Integration

Simplify CI by putting similar steps into a single action file (#2444) @DanielNoord

📦 Dependencies

Bump actions/checkout from 5 to 6 in the github-actions group (#2451) @dependabot[bot]

Bump astral-sh/setup-uv from 6 to 7 in the github-actions group (#2441) @dependabot[bot]

Changelog

Sourced from isort's changelog.

8.0.0 February 19 2026

Removed --old-finders and --magic-placement flags and old_finders configuration option. The legacy finder logic that relied on environment introspection has been removed (#2445) @joao-faria-dev

Update the plone profile to not clash with black (#2456) @ale-rt

6.1.0 October 1 2025

Add python 3.14 classifier and badge (#2409) @staticdev

Drop use of non-standard pkg_resources API (#2405) @dvarrazzo

6.0.1 Febuary 26 2025

Add OSError handling in find_imports_in_file (#2331) @kobarity

6.0.0 January 27 2025

Remove support for Python 3.8 (#2327) @DanielNoord

Python 3.13 support (#2306) @mayty

Speed up exists_case_sensitive calls (#2264) @correctmost

Ensure that split_on_trailing_comma works with as imports (#2340) @DanielNoord

Black profile: enable magic comma (#2236) @MrMino

Update line_length and single_line_exclusions in google profile (#2149) @jagapiou

Allow --diff to be used with --jobs (#2302) @mnakama

Fix wemake profile to have correct character limit (#2241) @sobolevn

Fix sort_reexports code mangling (#2283) @Helveg

Fix correct group by package tokenization (#2136) @glasnt

5.13.2 December 13 2023

Apply the bracket fix from issue #471 only for use_parentheses=True (#2184) @bp72

Confine pre-commit to stages (#2213) @davidculley

Fixed colors extras (#2212) @staticdev

5.13.1 December 11 2023

Fixed integration tests (#2208) @bp72

Fixed normalizing imports from more than one level of parent modules (issue/2152) (#2191) @bp72

Remove optional dependencies without extras (#2207) @staticdev

5.13.0 December 9 2023

Cleanup deprecated extras (#2089) @staticdev

Fixed #1989: settings lookup when working in stream based mode

Fixed 80 line length for wemake linter (#2183) @skatromb

Add support for Python 3.12 (#2175) @hugovk

Fixed: add newest version to pre-commit docs (#2190) @AzulGarza

Fixed assertions in test_git_hook (#2196) @mgorny

Removed check for include_trailing_comma for the Hanging Indent wrap mode (#2192) @bp72

Use the standard library tomllib on sufficiently new python (#2202) @eli-schwartz

Update pre-commit.md version number (#2197) @nicobako

... (truncated)

Commits

3459bde Merge pull request #2460 from PyCQA/DanielNoord-patch-1
6e70bb6 Update CHANGELOG for version 8.0.0
b0f2dab Merge pull request #2458 from skv0zsneg/issue/1882
313797b Fix lint.
7d3a6f5 Add ignore for cyclomatic complexity check.
6b9f895 Remove debug prints.
45f2497 Add tests for edge case future imports handler.
fe57bfd Add edge case future imports handler.
e8c127b Merge pull request #2457 from ale-rt/ale/2456/fix-plone-profile
293c201 Fix the Plone profile to be compatible with black
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Bumps [isort](https://github.com/PyCQA/isort) from 7.0.0 to 8.0.0. - [Release notes](https://github.com/PyCQA/isort/releases) - [Changelog](https://github.com/PyCQA/isort/blob/main/CHANGELOG.md) - [Commits](PyCQA/isort@7.0.0...8.0.0) --- updated-dependencies: - dependency-name: isort dependency-version: 8.0.0 dependency-type: direct:development update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com>

codecov · 2026-02-20T11:07:32Z

❌ 1 Tests Failed:

Tests completed	Failed	Passed	Skipped
409	1	408	3

View the top 1 failed test(s) by shortest run time

cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initial_workdir_secondary_files_expr

Stack Traces | 158s run time

CWL test execution failed. 
expected: {
    "indexedfile": {
        "checksum": "sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376",
        "class": "File",
        "location": "input.txt",
        "secondaryFiles": [
            {
                "checksum": "sha1$1f6fe811644355974cdd06d9eb695d6e859f3b44",
                "class": "File",
                "location": "input.txt.idx1",
                "size": 1500
            },
            {
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "location": "input.idx2",
                "size": 0
            },
            {
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "location": "input.txt.idx3",
                "size": 0
            },
            {
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "location": "input.txt.idx4",
                "size": 0
            },
            {
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "location": "input.txt.idx5",
                "size": 0
            },
            {
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "location": "input.idx6.txt",
                "size": 0
            },
            {
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "location": "input.txt.idx7",
                "size": 0
            },
            {
                "checksum": "sha1$47a013e660d408619d894b20806b1d5086aab03b",
                "class": "File",
                "location": "hello.txt",
                "size": 13
            },
            {
                "class": "Directory",
                "listing": [
                    {
                        "basename": "index",
                        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                        "class": "File",
                        "location": "index",
                        "size": 0
                    }
                ],
                "location": "input.txt_idx8"
            }
        ],
        "size": 1111
    },
    "outfile": {
        "checksum": "sha1$e2dc9daaef945ac15f01c238ed2f1660f60909a0",
        "class": "File",
        "location": "result.txt",
        "size": 142
    }
}
got: {
    "indexedfile": {
        "basename": "input.txt",
        "checksum": "sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt",
        "nameext": ".txt",
        "nameroot": "input",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt",
        "secondaryFiles": [
            {
                "basename": "input.txt.idx1",
                "checksum": "sha1$1f6fe811644355974cdd06d9eb695d6e859f3b44",
                "class": "File",
                "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
                "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx1",
                "nameext": ".idx1",
                "nameroot": "input.txt",
                "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx1",
                "size": 1500
            },
            {
                "basename": "input.idx2",
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
                "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.idx2",
                "nameext": ".idx2",
                "nameroot": "input",
                "path": ".../pytest-0/popen-gw2/unlabled_test5/input.idx2",
                "size": 0
            },
            {
                "basename": "input.txt.idx3",
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
                "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx3",
                "nameext": ".idx3",
                "nameroot": "input.txt",
                "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx3",
                "size": 0
            },
            {
                "basename": "input.txt.idx4",
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
                "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx4",
                "nameext": ".idx4",
                "nameroot": "input.txt",
                "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx4",
                "size": 0
            },
            {
                "basename": "input.txt.idx5",
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
                "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx5",
                "nameext": ".idx5",
                "nameroot": "input.txt",
                "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx5",
                "size": 0
            },
            {
                "basename": "input.idx6.txt",
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
                "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.idx6.txt",
                "nameext": ".txt",
                "nameroot": "input.idx6",
                "path": ".../pytest-0/popen-gw2/unlabled_test5/input.idx6.txt",
                "size": 0
            },
            {
                "basename": "input.txt.idx7",
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
                "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx7",
                "nameext": ".idx7",
                "nameroot": "input.txt",
                "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx7",
                "size": 0
            },
            {
                "basename": "hello.txt",
                "checksum": "sha1$47a013e660d408619d894b20806b1d5086aab03b",
                "class": "File",
                "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
                "location": "file://.../pytest-0/popen-gw2/unlabled_test5/hello.txt",
                "nameext": ".txt",
                "nameroot": "hello",
                "path": ".../pytest-0/popen-gw2/unlabled_test5/hello.txt",
                "size": 13
            },
            {
                "basename": "input.txt_idx8",
                "class": "Directory",
                "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
                "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt_idx8",
                "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt_idx8"
            }
        ],
        "size": 1111
    },
    "outfile": {
        "basename": "result.txt",
        "checksum": "sha1$e2dc9daaef945ac15f01c238ed2f1660f60909a0",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/result.txt",
        "nameext": ".txt",
        "nameroot": "result",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/result.txt",
        "size": 142
    }
}
caused by: failed comparison for key 'indexedfile': expected: {
    "checksum": "sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376",
    "class": "File",
    "location": "input.txt",
    "secondaryFiles": [
        {
            "checksum": "sha1$1f6fe811644355974cdd06d9eb695d6e859f3b44",
            "class": "File",
            "location": "input.txt.idx1",
            "size": 1500
        },
        {
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "location": "input.idx2",
            "size": 0
        },
        {
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "location": "input.txt.idx3",
            "size": 0
        },
        {
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "location": "input.txt.idx4",
            "size": 0
        },
        {
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "location": "input.txt.idx5",
            "size": 0
        },
        {
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "location": "input.idx6.txt",
            "size": 0
        },
        {
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "location": "input.txt.idx7",
            "size": 0
        },
        {
            "checksum": "sha1$47a013e660d408619d894b20806b1d5086aab03b",
            "class": "File",
            "location": "hello.txt",
            "size": 13
        },
        {
            "class": "Directory",
            "listing": [
                {
                    "basename": "index",
                    "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                    "class": "File",
                    "location": "index",
                    "size": 0
                }
            ],
            "location": "input.txt_idx8"
        }
    ],
    "size": 1111
}
got: {
    "basename": "input.txt",
    "checksum": "sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376",
    "class": "File",
    "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
    "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt",
    "nameext": ".txt",
    "nameroot": "input",
    "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt",
    "secondaryFiles": [
        {
            "basename": "input.txt.idx1",
            "checksum": "sha1$1f6fe811644355974cdd06d9eb695d6e859f3b44",
            "class": "File",
            "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
            "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx1",
            "nameext": ".idx1",
            "nameroot": "input.txt",
            "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx1",
            "size": 1500
        },
        {
            "basename": "input.idx2",
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
            "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.idx2",
            "nameext": ".idx2",
            "nameroot": "input",
            "path": ".../pytest-0/popen-gw2/unlabled_test5/input.idx2",
            "size": 0
        },
        {
            "basename": "input.txt.idx3",
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
            "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx3",
            "nameext": ".idx3",
            "nameroot": "input.txt",
            "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx3",
            "size": 0
        },
        {
            "basename": "input.txt.idx4",
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
            "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx4",
            "nameext": ".idx4",
            "nameroot": "input.txt",
            "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx4",
            "size": 0
        },
        {
            "basename": "input.txt.idx5",
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
            "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx5",
            "nameext": ".idx5",
            "nameroot": "input.txt",
            "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx5",
            "size": 0
        },
        {
            "basename": "input.idx6.txt",
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
            "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.idx6.txt",
            "nameext": ".txt",
            "nameroot": "input.idx6",
            "path": ".../pytest-0/popen-gw2/unlabled_test5/input.idx6.txt",
            "size": 0
        },
        {
            "basename": "input.txt.idx7",
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
            "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx7",
            "nameext": ".idx7",
            "nameroot": "input.txt",
            "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx7",
            "size": 0
        },
        {
            "basename": "hello.txt",
            "checksum": "sha1$47a013e660d408619d894b20806b1d5086aab03b",
            "class": "File",
            "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
            "location": "file://.../pytest-0/popen-gw2/unlabled_test5/hello.txt",
            "nameext": ".txt",
            "nameroot": "hello",
            "path": ".../pytest-0/popen-gw2/unlabled_test5/hello.txt",
            "size": 13
        },
        {
            "basename": "input.txt_idx8",
            "class": "Directory",
            "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
            "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt_idx8",
            "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt_idx8"
        }
    ],
    "size": 1111
}
caused by: field 'secondaryFiles' failed comparison: expected: [
    {
        "checksum": "sha1$1f6fe811644355974cdd06d9eb695d6e859f3b44",
        "class": "File",
        "location": "input.txt.idx1",
        "size": 1500
    },
    {
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "location": "input.idx2",
        "size": 0
    },
    {
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "location": "input.txt.idx3",
        "size": 0
    },
    {
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "location": "input.txt.idx4",
        "size": 0
    },
    {
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "location": "input.txt.idx5",
        "size": 0
    },
    {
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "location": "input.idx6.txt",
        "size": 0
    },
    {
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "location": "input.txt.idx7",
        "size": 0
    },
    {
        "checksum": "sha1$47a013e660d408619d894b20806b1d5086aab03b",
        "class": "File",
        "location": "hello.txt",
        "size": 13
    },
    {
        "class": "Directory",
        "listing": [
            {
                "basename": "index",
                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
                "class": "File",
                "location": "index",
                "size": 0
            }
        ],
        "location": "input.txt_idx8"
    }
]
got: [
    {
        "basename": "input.txt.idx1",
        "checksum": "sha1$1f6fe811644355974cdd06d9eb695d6e859f3b44",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx1",
        "nameext": ".idx1",
        "nameroot": "input.txt",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx1",
        "size": 1500
    },
    {
        "basename": "input.idx2",
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.idx2",
        "nameext": ".idx2",
        "nameroot": "input",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/input.idx2",
        "size": 0
    },
    {
        "basename": "input.txt.idx3",
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx3",
        "nameext": ".idx3",
        "nameroot": "input.txt",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx3",
        "size": 0
    },
    {
        "basename": "input.txt.idx4",
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx4",
        "nameext": ".idx4",
        "nameroot": "input.txt",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx4",
        "size": 0
    },
    {
        "basename": "input.txt.idx5",
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx5",
        "nameext": ".idx5",
        "nameroot": "input.txt",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx5",
        "size": 0
    },
    {
        "basename": "input.idx6.txt",
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.idx6.txt",
        "nameext": ".txt",
        "nameroot": "input.idx6",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/input.idx6.txt",
        "size": 0
    },
    {
        "basename": "input.txt.idx7",
        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt.idx7",
        "nameext": ".idx7",
        "nameroot": "input.txt",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt.idx7",
        "size": 0
    },
    {
        "basename": "hello.txt",
        "checksum": "sha1$47a013e660d408619d894b20806b1d5086aab03b",
        "class": "File",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/hello.txt",
        "nameext": ".txt",
        "nameroot": "hello",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/hello.txt",
        "size": 13
    },
    {
        "basename": "input.txt_idx8",
        "class": "Directory",
        "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
        "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt_idx8",
        "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt_idx8"
    }
]
caused by: expected: {
    "class": "Directory",
    "listing": [
        {
            "basename": "index",
            "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
            "class": "File",
            "location": "index",
            "size": 0
        }
    ],
    "location": "input.txt_idx8"
}
got: {
    "basename": "input.txt_idx8",
    "class": "Directory",
    "dirname": ".../pytest-0/popen-gw2/unlabled_test5",
    "location": "file://.../pytest-0/popen-gw2/unlabled_test5/input.txt_idx8",
    "path": ".../pytest-0/popen-gw2/unlabled_test5/input.txt_idx8"
}
caused by: 'listing' is mandatory field in Directory object
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/search-job.json
output:
  outfile:
    class: File
    checksum: sha1$e2dc9daaef945ac15f01c238ed2f1660f60909a0
    location: result.txt
    size: 142
  indexedfile:
    location: input.txt
    class: File
    checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
    secondaryFiles:
    - location: input.txt.idx1
      class: File
      checksum: sha1$1f6fe811644355974cdd06d9eb695d6e859f3b44
      size: 1500
    - location: input.idx2
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.txt.idx3
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.txt.idx4
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.txt.idx5
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.idx6.txt
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      class: File
      location: input.txt.idx7
      size: 0
    - checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
      class: File
      location: hello.txt
      size: 13
    - class: Directory
      listing:
      - basename: index
        checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
        class: File
        location: index
        size: 0
      location: input.txt_idx8
    size: 1111
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/search.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initial_workdir_secondary_files_expr
doc: Test InitialWorkDirRequirement linking input files and capturing 
  secondaryFiles on input and output. Also tests the use of a variety of 
  parameter references and expressions in the secondaryFiles field.
tags:
- initial_work_dir
- inline_javascript
- workflow
line: '512'

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dependabot bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Feb 20, 2026

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Bump isort from 7.0.0 to 8.0.0#207

Bump isort from 7.0.0 to 8.0.0#207
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dependabot bot commented on behalf of github Feb 20, 2026

8.0.0

Changes

🚀 Features

👷 Continuous Integration

📦 Dependencies

8.0.0 February 19 2026

6.1.0 October 1 2025

6.0.1 Febuary 26 2025

6.0.0 January 27 2025

5.13.2 December 13 2023

5.13.1 December 11 2023

5.13.0 December 9 2023

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codecov bot commented Feb 20, 2026 •

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