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State
Jim Robinson edited this page Feb 22, 2020
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This form for state requires knowledge of the file details. It is used internally, and in sharable links.
<chr 1 index>, <chr 2 index>, <resolution index>, <left>, <top>, <pixel size>, <normalization>, <unit (optional)
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chr index: index of chromosome from dataset chromosome array. For Aidenlab pipeline the first chromosome (index 0) is usually the whole-genome pseudo chromosome.
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resolution index: Index for resolution (bin size) for the specified unit (BP or FRAG). Currently only base pair ("BP") resolutions are supported
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left: the left position of the viewport in bins
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pixel size: Size in pixels of a map cell
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top: the top position of the viewport in bins
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normalization: NONE | KR | VC_SQRT | etc
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unit: reserved for future use, currently ignored