THIS REPO IS 🚧 UNDER CONSTRUCTION 🚧 and NOT Used in ANY production CODE

Nextflow Conversion of PsipredTask.pm

PsiPred

flowchart TD
    p0((Channel.fromPath))
    p1([splitFasta])
    p2(( ))
    p3[psipred:runPsipred]
    p4(( ))
    p5(( ))
    p6(( ))
    p0 --> p1
    p1 -->|seqs| p3
    p2 -->|fix| p3
    p3 --> p6
    p3 --> p5
    p3 --> p4

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Decription of nextflow configuration parameters:

param	value type	description
inputFilePath	string	Path to input file
outputDir	string	Path to where you would like output files stored
databaseFasta	string	Path to the fasta file that you would like to use a the database for Psipred

Get Started

• Install Nextflow

  curl https://get.nextflow.io | bash

• Run the script

  nextflow run VEuPathDB/Psipred -with-trace -c <config_file> -r main