Fix GitHub Actions Ubuntu runner libssl.so.3.1 error #62
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@@ -40,4 +40,5 @@ makefile | |
| ^\.github | ||
| netdiffuseR\.Rcheck | ||
| ^\.devcontainer$ | ||
| ^\.vscode$ | ||
| ^scripts$ | ||
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Member
There was a problem hiding this comment. Cool! But we need to ensure that |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,89 @@ | ||
| #!/usr/bin/env bash | ||
| # | ||
| # check-github-actions-local.sh - Simulate GitHub Actions checks locally | ||
| # | ||
| # This script replicates the GitHub Actions workflow locally using Docker | ||
| # to test changes before pushing to GitHub. | ||
| # | ||
| # Usage: | ||
| # ./scripts/check-github-actions-local.sh [ubuntu|macos|windows|all] | ||
| # | ||
| # Requirements: | ||
| # - Docker installed and running | ||
| # - Run from repository root | ||
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| set -e | ||
| set -u | ||
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| # Colors | ||
| RED='\033[0;31m' | ||
| GREEN='\033[0;32m' | ||
| YELLOW='\033[1;33m' | ||
| BLUE='\033[0;34m' | ||
| NC='\033[0m' | ||
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| # Configuration | ||
| PLATFORM="${1:-ubuntu}" | ||
| PACKAGE_NAME=$(awk '/^Package:/ {print $2}' DESCRIPTION) | ||
| PACKAGE_VERSION=$(awk '/^Version:/ {print $2}' DESCRIPTION) | ||
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| echo -e "${GREEN}========================================${NC}" | ||
| echo -e "${GREEN}GitHub Actions Local Check${NC}" | ||
| echo -e "${GREEN}========================================${NC}" | ||
| echo "Package: ${PACKAGE_NAME} ${PACKAGE_VERSION}" | ||
| echo "Platform: ${PLATFORM}" | ||
| echo "" | ||
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| case "$PLATFORM" in | ||
| ubuntu|linux) | ||
| echo -e "${YELLOW}[1/3] Testing Ubuntu (r-release)...${NC}" | ||
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| # Use R-hub Ubuntu container (simulates ubuntu-latest with R release) | ||
| docker run --rm \ | ||
| -v "$(pwd):/workspace" \ | ||
| -w /workspace \ | ||
| ghcr.io/r-hub/containers/ubuntu-release:latest \ | ||
| bash -c " | ||
| set -e | ||
| echo '>>> Installing system dependencies...' | ||
| apt-get update > /dev/null 2>&1 | ||
| apt-get install -y libssl-dev libcurl4-openssl-dev libglpk-dev libgmp3-dev libxml2-dev > /dev/null 2>&1 | ||
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| echo '>>> Installing R package dependencies...' | ||
| Rscript -e \"install.packages(c('Rcpp', 'RcppArmadillo', 'sna', 'network', 'networkDynamic', 'Matrix', 'MASS', 'MatchIt', 'SparseM', 'boot', 'igraph', 'viridisLite', 'rcmdcheck', 'remotes', 'knitr'), repos='https://packagemanager.posit.co/cran/__linux__/noble/latest', quiet=TRUE)\" | ||
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| echo '>>> Running R CMD check...' | ||
| Rscript -e \"rcmdcheck::rcmdcheck(args = c('--no-manual', '--as-cran'), error_on = 'warning', check_dir = 'check')\" | ||
| " && echo -e "${GREEN}✓ Ubuntu check passed${NC}" || echo -e "${RED}✗ Ubuntu check failed${NC}" | ||
| ;; | ||
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| macos|mac) | ||
| echo -e "${YELLOW}macOS checks require macOS host - skipped${NC}" | ||
| echo "To test on macOS, run: R CMD build . && R CMD check --as-cran *.tar.gz" | ||
| ;; | ||
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| windows|win) | ||
| echo -e "${YELLOW}Windows checks require Windows host - skipped${NC}" | ||
| echo "To test on Windows, use rhub or GitHub Actions" | ||
| ;; | ||
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| all) | ||
| echo -e "${BLUE}Running all available checks...${NC}" | ||
| $0 ubuntu | ||
| ;; | ||
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| *) | ||
| echo -e "${RED}Unknown platform: $PLATFORM${NC}" | ||
| echo "Usage: $0 [ubuntu|macos|windows|all]" | ||
| exit 1 | ||
| ;; | ||
| esac | ||
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| echo "" | ||
| echo -e "${GREEN}========================================${NC}" | ||
| echo -e "${GREEN}Local check completed!${NC}" | ||
| echo -e "${GREEN}========================================${NC}" | ||
| echo "" | ||
| echo "Note: This simulates GitHub Actions but may have minor differences." | ||
| echo "For exact GitHub Actions behavior, push to a branch and create a PR." | ||
| echo "" |
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Member
There was a problem hiding this comment. copilot was fixing this in #60. Just closed that in favor of this. |
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Thanks for doing this! But I would switch to use r-lib's actions instead: https://github.com/UofUEpiBio/epiworldR/blob/ea75e6e0d6856a30efc8978129ecf5a43c986799/.github/workflows/r.yml#L25-L57