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Add Measles_File_Prep script#59

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AbbeyM1 wants to merge 4 commits intoUPHL-BioNGS:mainfrom
AbbeyM1:main
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Add Measles_File_Prep script#59
AbbeyM1 wants to merge 4 commits intoUPHL-BioNGS:mainfrom
AbbeyM1:main

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@AbbeyM1 AbbeyM1 commented Nov 12, 2025

Add script too merge measles fastas and create date file for phylogenetic analysis

Script to merge fastas and create date file for measles phylogenetic analysis.
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@erinyoung erinyoung left a comment

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In the Readme of this repo, we have a few lines about each script that includes what it is intended to do and how it does it.

Does something like the following seem okay?

Measles_File_Prep.py

This script automates data preparation for phylogenetic analysis by merging individual FASTA files into consolidated datasets while renaming sequence headers to match their original filenames. It also processes a metadata spreadsheet to extract and clean specific accession IDs and collection dates, saving them into a simplified tab-separated text file.

EXAMPLE:

python Measles_File_Prep.py

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2 participants