Nextflow for allocoprophagy detection

Hélène Tonnelé, Yuliia Chyzhyk, Luisa Santus
Project course, UBDS3 2025

Clone the directory:

git clone git@github.com:UBDS-3/nextflow_project.git

Find the containers here: Containers

We will upload the solutions to each exercise after each day.

Overview of the important folders:

• Day 1 Intro : ./tutorial/day1_intro

• Day 3 Containers : ./tutorial/day3_containers

• Day 4 Config : ./tutorial/day4_config

• Day 4 Pipeline : ./tutorial/day4_pipeline

• Modules : ./modules_exercise