DEShiny

A pipeline for processing and visualization of Lexogen Quantseq Pool data

basic useage

docker run -p 8080:8080 timnicholsonshaw/deshiny:latest

• Navigate to localhost:8080 in your browser
• An example sample sheet is available here
• Other default values will work for a test run with the above sample sheet

Features

• A page for setting pipeline options with input validation. Sample sheet validation coming soon.

• A dashboard for visualization of pipeline status

• Visualization of demultiplexed counts

• Alignment quality metrics

• Deduplication quality metrics

• Table views of gene counts with visualizations coming soon