[ENH] Add script to split toni scans that suffered scanner restart #377
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
When the ToNI scanner has to restart during a scan session it seems to merge pre and post restart scans into the same output zip file which causes dicoms to be mixed into a single folder when the series number and series description are identical and creates duplicate series numbers in the session when the series descriptions differ.
This adds a script to separate these zip files into parts that can then be treated as different 'repeats' in datman nomenclature to avoid issues with xnat upload and nifti conversion tools.