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ABC the splitting classes

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#429 In ProteinGym/proteingym-base;

· karel-w opened on Dec 18, 2025

Revisit ipynb 02 to be reflective off the current state

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#428 In ProteinGym/proteingym-base;

· karel-w opened on Dec 15, 2025

Stratify splits on targets

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#403 In ProteinGym/proteingym-base;

· hredestig opened on Dec 3, 2025

Support units better than simple strings

Status: Open.

Feature

#375 In ProteinGym/proteingym-base;

· hredestig opened on Nov 17, 2025

[Benchmark] Cleanup - Use pip install to install proteingym-base in Dockerfile

Status: Open.

#369 In ProteinGym/proteingym-base;

· tintinrevient opened on Nov 13, 2025

Store multiple MSA weights

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#362 In ProteinGym/proteingym-base;

· karel-w opened on Oct 31, 2025

Should we consider dumping weights to separate location?

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#361 In ProteinGym/proteingym-base;

· karel-w opened on Oct 30, 2025

Release package on PyPI

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#357 In ProteinGym/proteingym-base;

· JCZuurmond opened on Oct 30, 2025

Port ProteinGym datasets to this new ProteinGym implementation

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#356 In ProteinGym/proteingym-base;

· JCZuurmond opened on Oct 30, 2025

Command line command for splitting datasets

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#351 In ProteinGym/proteingym-base;

· JCZuurmond opened on Oct 23, 2025

Use variable for <code>sequence</code> feature in <code>to_df</code> methods

Status: Open.

#347 In ProteinGym/proteingym-base;

· srivastavaprashant opened on Oct 20, 2025

Computed properties on MSA

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#340 In ProteinGym/proteingym-base;

· hredestig opened on Oct 16, 2025