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The Planteome Project

Home for the Common Reference Ontologies for Plants

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  1. plant-ontology plant-ontology Public

    Repository for the Plant Ontology

    Perl 70 18

  2. plant-trait-ontology plant-trait-ontology Public

    Explore the Plant Trait Ontology on the Planteome site.

    Python 47 12

  3. plant-experimental-conditions-ontology plant-experimental-conditions-ontology Public

    Repository for the Plant Experimental Conditions Ontology

    Python 12 5

  4. plant-stress-ontology plant-stress-ontology Public

    An ontology containing biotic and abiotic plant stresses. Part of the Planteome suite of reference ontologies. Formerly called the Ontology of Plant Stress

    Makefile 18 8

  5. trait-mappings trait-mappings Public

    This repo contains the mapping files betweeen the Trait Ontology and the Crop Ontology files

    1

  6. planteome-annotation-data planteome-annotation-data Public

    This is a place to discuss issues around the Planteome annotation data and store useful scripts etc.

    Perl 1

Repositories

Showing 10 of 79 repositories
  • plant-stress-ontology Public

    An ontology containing biotic and abiotic plant stresses. Part of the Planteome suite of reference ontologies. Formerly called the Ontology of Plant Stress

    Planteome/plant-stress-ontology’s past year of commit activity
    Makefile 18 8 2 0 Updated Dec 16, 2025
  • plant-experimental-conditions-ontology Public

    Repository for the Plant Experimental Conditions Ontology

    Planteome/plant-experimental-conditions-ontology’s past year of commit activity
    Python 12 CC-BY-4.0 5 7 0 Updated Dec 8, 2025
  • plant-trait-ontology Public

    Explore the Plant Trait Ontology on the Planteome site.

    Planteome/plant-trait-ontology’s past year of commit activity
    Python 47 CC-BY-4.0 12 253 0 Updated Nov 15, 2025
  • plant-ontology Public

    Repository for the Plant Ontology

    Planteome/plant-ontology’s past year of commit activity
    Perl 70 CC-BY-4.0 18 108 2 Updated Nov 6, 2025
  • trait-mappings Public

    This repo contains the mapping files betweeen the Trait Ontology and the Crop Ontology files

    Planteome/trait-mappings’s past year of commit activity
    1 0 0 0 Updated Oct 31, 2025
  • planteome-annotation-data Public

    This is a place to discuss issues around the Planteome annotation data and store useful scripts etc.

    Planteome/planteome-annotation-data’s past year of commit activity
    Perl 1 0 25 0 Updated Oct 6, 2025
  • amigo Public Forked from geneontology/amigo

    This repo is the Planteome fork of geneontology.org AmiGO2 project. Issues in this repo should be reported only on AmiGO issues. Issues can be pushed upstream if relevant for GO.

    Planteome/amigo’s past year of commit activity
    JavaScript 4 BSD-3-Clause 18 12 0 Updated Sep 30, 2025
  • go-site-xrefs-fork Public Forked from geneontology/go-site

    Use this to add xrefs to metadata/db-xrefs.yaml and submit a pull request. Then they will be in the global xref file that AmiGO2 uses. Before making any changes, you need to update the fork to be consistent with the GO version. Use "git fetch upstream, git merge upstream/master, git push.

    Planteome/go-site-xrefs-fork’s past year of commit activity
    JavaScript 0 BSD-3-Clause 92 1 0 Updated Sep 11, 2025
  • CO_369-sainfoin-traits Public

    Sainfoin Trait Ontology

    Planteome/CO_369-sainfoin-traits’s past year of commit activity
    0 0 1 0 Updated May 29, 2025
  • CO_334-cassava-traits Public

    Cassava Trait Ontology maintained by Crop Ontology and Cassavabase

    Planteome/CO_334-cassava-traits’s past year of commit activity
    1 1 47 1 Updated May 15, 2025

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