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# Conflicts: # my_project/hello_world.py # pyproject.toml # uv.lock
# Conflicts: # .gitignore # pyproject.toml # uv.lock
# Conflicts: # pyproject.toml # uv.lock
Rename .plx to .mthds and update VS Code file associations for the MTHDS standard migration. Remove legacy AI-assistant rule files (.blackboxrules, .cursor/, .windsurfrules.md, copilot-instructions, AGENTS.md, CLAUDE.md, CHANGELOG.md) and add .pipelex/ config directory. Update dependencies to pipelex 0.18.0b3. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
# Conflicts: # pyproject.toml # uv.lock
…ds-1 # Conflicts: # .pipelex/inference/backends.toml # .pipelex/inference/backends/blackboxai.toml # .pipelex/inference/deck/1_llm_deck.toml # .pipelex/inference/deck/3_extract_deck.toml # .pipelex/inference/routing_profiles.toml # .pipelex/pipelex.toml
Replace taplo dev dependency with plxt (Pipelex Tools CLI built from vscode-pipelex), add .pipelex/toml_config.toml for formatter settings, add `make plxt` target for rebuilding from source, and reformat TOML files with aligned keys. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
…onfig files Migrate from execute_pipeline() to PipelexRunner, add __main__ guard to hello_world.py, introduce agent-check and agent-test Make targets, switch pipelex source to _epic-mthds-1, reformat pyproject.toml to 2-space indent, and delete .pipelex/ config files now shipped by the pipelex package. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
…ds-2 # Conflicts: # .pipelex/inference/deck/1_llm_deck.toml # .pipelex/inference/deck/3_extract_deck.toml # .pipelex/pipelex.toml # .pipelex/telemetry.toml # my_project/hello_world.py # pyproject.toml # tests/e2e/test_my_project.py
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Cursor Bugbot has reviewed your changes and found 3 potential issues.
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| .pipelex/storage | ||
| pipeline_0*/ | ||
| .pipelex/storage | ||
| *.json |
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Overly broad *.json gitignore breaks CLA workflow
High Severity
The *.json glob in .gitignore will cause git to ignore all JSON files across the entire repository. This will break the CLA workflow (.github/workflows/cla.yml references signatures/version1/cla.json), prevent any future JSON config or input files from being tracked, and silently drop files that developers expect to commit. This was likely intended to ignore only pipeline output JSON files, and a more targeted pattern like pipelex-wip/**/*.json or pipeline_0*/*.json is needed.
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| Execution graph: pipelex-wip/cv_screening/graph/reactflow.html | ||
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| ✻ Churned for 2m 9s No newline at end of file |
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Accidentally committed Claude Code session transcript
Medium Severity
This file is a full Claude Code session transcript that appears to be accidentally committed. It contains internal workflow details, local filesystem paths (e.g., /Users/lchoquel/repos/PipelexLab/pipelex-demo), tool version info, and operational details that don't belong in the repository.
| base_llm_deck.toml | ||
| .pipelex/storage | ||
| pipeline_0*/ | ||
| .pipelex/storage |


Note
Low Risk
Mostly documentation/editor configuration and gitignore changes; minimal impact on runtime behavior aside from potentially hiding generated JSON artifacts from being committed.
Overview
Removes large assistant/editor instruction files (e.g.
.blackboxrules,.github/copilot-instructions.md,.windsurfrules.md, and most.cursor/rules/*.mdc) and trims the remaining Cursor command rules.Updates dev tooling configs by tweaking
.vscode/settings.json(adds*.mthdsassociation + format-on-save fortoml/mthds) and expands.gitignoreto exclude generated pipeline run folders (pipeline_0*/) and JSON outputs (*.json). Also adds a large captured CLI session log file (2026-02-21-...txt).Written by Cursor Bugbot for commit 58ab00a. This will update automatically on new commits. Configure here.