bossr consists of functions for automated segmentation of
oligodendrocytes in 2D, 3D and 4D arrays. FAST model inherits the bossr with its pre-configured parameters.
To install the development version:
devtools::install_github('pennsive/bossr')For an introduction to the bossr pipeline, check out the main article
in our pkgdown
site.
A companion data package, bossrdata, is available to enable users to
follow along the examples in the main article. See the article for more
information on how to install bossrdata.
References to the main functions can be found here.
To get help submit an issue on the GitHub repository.
If you use the bossr, please cite the following papers: Bae, Eunchan, et al. "FAST: Fast, free, consistent, and unsupervised oligodendrocyte segmentation and tracking system." eNeuro (2025).