[WIP] Str counts#37

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hdashnow wants to merge 6 commits intomasterfrom

Commits on Oct 23, 2018

set sample name differently depending on number of underscores in the fastq filename
hdashnow
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Commits on Feb 14, 2019

report in STRetch output: locuscoverage_log, total_assigned_log, genomecov
hdashnow
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