[WIP] Update notebooks on Jupyter Book

[RDaxini]

Describe your changes

Add notebooks form tutorials_and_tools\tutorials_and_tools to Jupyter Book, follows new filename convention marking HPC/API required (#184)

Issue ticket number and link

Fixes # (issue)

Type of change

Please delete options that are not relevant.

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to not work as expected)
• This change requires a documentation update

Checklist before requesting a review

• I have performed a self-review of my code
• Code changes are covered by tests.
• Code changes have been evaluated for compatibility/integration with Scenario analysis (for future PRs)
• Code changes have been evaluated for compatibility/integration with geospatial autotemplating (for future PRs)
• New functions added to init.py
• API.rst is up to date, along with other sphinx docs pages
• Example notebooks are rerun and differences in results scrutinized
• What's new changelog has been updated in the docs

[codecov-commenter]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 72.08%. Comparing base (51172fd) to head (0ac02c7).
⚠️ Report is 275 commits behind head on development.

Additional details and impacted files

@@               Coverage Diff               @@
##           development     #246      +/-   ##
===============================================
+ Coverage        71.66%   72.08%   +0.42%     
===============================================
  Files               40       40              
  Lines             4524     4646     +122     
===============================================
+ Hits              3242     3349     +107     
- Misses            1282     1297      +15     

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[shirubana]

My two cents: not every Jupyter journal needs to live in the same Jupyter Book. We now have too many journals with different purposes. The original intent was for the book to serve as a landing page for teaching and showcasing—but some notebooks are now deeper dives or specialized tools. At this stage, it may make sense to separate them into categories: a gallery of examples, training/tutorials, and specific code utilities.

[RDaxini]

Moved to #303