Enable using split schism domains

[zhengtaocui]

The original code use 4 fixed NWM v3 domains, atlgulf, pacific, hawaii and purtorico. Now a subsetting tool that can be used to split these domains into small subdomains is developed. The code of the SCHISM workflow is updated to be able to use any of the subdomains created by the SCHISM domain subsetting tool.
The SCHISM workflow is also divided into two workflows. The first workflow creates all input files for the SCHISM model, and the second workflow runs the SCHSIM model. This is required for consistency between the ways how the SFINCS and SCHSIM simulations are performed.

Additions

-coastal/calib/run_sing_coastal_workflow_pre_schism2.bash
-coastal/calib/sing_schism_forcing.bash
-In the configuration a domain list yaml file is required to specific the model grids and parameters. This is an example of the domain list file

domain:

• name: mesh_a
  path: ......\coastalmodels\schism\mesh_a\ # path to base model files
  region: hawaii # General region or basin group
  epsg: 32604
  notes: >
  Example SCHISM domain

Removals

Changes

coastal/SFINCS/coastalforcing/main.py
coastal/SFINCS/coastalforcing/process_data/data_processor.py
coastal/calib/initial_discharge.bash
coastal/calib/make_tpxo_ocean.bash
coastal/calib/post_regrid_stofs.bash
coastal/calib/pre_regrid_stofs.bash
coastal/calib/pre_schism.bash
coastal/calib/run_sing_coastal_workflow_make_tpxo_ocean.bash
coastal/calib/run_sing_coastal_workflow_post_schism.bash
coastal/calib/run_sing_coastal_workflow_update_params.bash
coastal/calib/sing_run.bash
coastal/calib/update_param.bash

Testing

1.Tested Hawaii mesh_a domain on the compute nodes. Test passed.

Screenshots

Notes

Todos

Checklist

• PR has an informative and human-readable title
• Changes are limited to a single goal (no scope creep)
• Code can be automatically merged (no conflicts)
• Code follows project standards (link if applicable)
• Passes all existing automated tests
• Any change in functionality is tested
• New functions are documented (with a description, list of inputs, and expected output)
• Placeholder code is flagged / future todos are captured in comments
• Visually tested in supported browsers and devices (see checklist below 👇)
• Project documentation has been updated (including the "Unreleased" section of the CHANGELOG)
• Reviewers requested with the Reviewers tool ➡️

Testing checklist

Target Environment support

• Linux

[zhengtaocui]

This is created for a wrong merging branch. Recreated a PR at #63. Closing this one.