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6 changes: 3 additions & 3 deletions README.md
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Expand Up @@ -35,12 +35,12 @@ This version requires python 3.9, `bedtools`, `samtools`, `pigz`, `wget`, `git`,

### Installing with Conda

1. Create a conda environment with `conda create -n maxatac -c bioconda python=3.9 samtools wget bedtools ucsc-bedgraphtobigwig pigz`
1. Create a conda environment with `conda create -n quant-maxatac -c bioconda python=3.9 samtools wget bedtools ucsc-bedgraphtobigwig pigz`

> If you get an error regarding graphviz while training a model, re-install graphviz with `conda install graphviz`

2. A. To install quant-maxATAC with first install the packages and their specific versions in requirements.txt file `pip install -r packaging/constraints/py3.9_requirements_20240807.txt`
B. Once the requirements are installed then install quant-maxatac with `pip install .`
2. A. To install quant-maxATAC, first download a local version of this GitHub repository. Then, install required versions of packages from the following requirements.txt file (included with the repository) `pip install -r packaging/constraints/py3.9_requirements_20240807.txt`
B. Once the requirements are installed then install quant-maxatac with `pip install -e /path/to/local/version/of/GitHub/repository.`

3. Test installation with `maxatac -h`

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