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L-kuehl/README.md

Hi 👋, I'm Lucas Kühl

PhD candidate with background in computational analysis of cellular behavior and morphology in migration context at Universitätsklinikum Münster (UKM)

🔭 I'm currently working on

Currently studying how mechanical forces are transmitted and incorporated within living cells using Particle Image Velocimetry.

💻 Tech Stack

Languages

Python R JavaScript

ML / Data

PyTorch scikit-learn NumPy Pandas OpenCV

DevOps

Docker FastAPI

🌐 Connect

LinkedIn Email

🚀 Featured Projects

Cellmorph — Python library for cell morphology analysis in microscopy time-series.

  • Extracts 260+ morphological features from segmentation masks
  • Boundary curvature analysis, protrusion detection, Fourier descriptors
  • Bayesian cell tracking for multi-cell processing

PIV-DownStream_Analysis — Downstream Particle Image Velocimetry Pipeline.

  • PIV Analysis using batched PIVLab script
  • Nuclear centered polar particle flow analysis
  • Quantification of spatial force transduction

Pinned Loading

  1. cellmorph cellmorph Public

    Python library for extracting 150+ morphological features from cell segmentation masks in microscopy time-series. Includes static shape metrics, dynamic features, boundary curvature analysis, protr…

    Python

  2. PIV-DownStream_Analysis PIV-DownStream_Analysis Public

    Downstream processing pipeline for PIVLab velocity data from live-cell microscopy. Nucleus-centered polar coordinate analysis to quantify spatial flow patterns in migrating cells.

    Python

  3. circular_statistics circular_statistics Public

    Circular Statistics Python is a robust library for analyzing circular (directional) data in Python

    Python