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Update scprep to match phate versions

enhancement

Status: Open.

#142 In KrishnaswamyLab/scprep;

· bjoaofelipe opened on Sep 22, 2025

batche effects？

enhancement

Status: Open.

#140 In KrishnaswamyLab/scprep;

· Han-zh210 opened on Jan 6, 2025

License is confusing

bug

Status: Open.

#139 In KrishnaswamyLab/scprep;

· hyandell opened on Sep 13, 2024

Unable to run test cases

bug

Status: Open.

#138 In KrishnaswamyLab/scprep;

· stkgo opened on Feb 28, 2024

<code>scprep.io.download.download_google_drive</code> failing due to google api changes

bug

Status: Open.

#132 In KrishnaswamyLab/scprep;

· atong01 opened on Jun 27, 2022

scprep <code>install_github</code> tests are failing

bug

Status: Open.

#127 In KrishnaswamyLab/scprep;

· scottgigante-immunai opened on Feb 23, 2022

scprep slingshot tests are failing

bug

Status: Open.

#126 In KrishnaswamyLab/scprep;

· scottgigante-immunai opened on Feb 23, 2022

Explicitly return lineages from scprep.run.slingshot.Slingshot

enhancement

Status: Open.

#122 In KrishnaswamyLab/scprep;

· alex-claman opened on Jun 17, 2021

Density subsampling

enhancement

Status: Open.

#106 In KrishnaswamyLab/scprep;

· scottgigante opened on Jun 8, 2020

download_google_drive doesn't notify of permissions errors

bug

Status: Open.

#105 In KrishnaswamyLab/scprep;

· scottgigante opened on May 29, 2020

Helper function to run scanpy louvain / leiden and produce a desired number of clusters

enhancement

Status: Open.

#102 In KrishnaswamyLab/scprep;

· dburkhardt opened on May 6, 2020

How to re-order legends when using scprep.plot.rotate_scatter3

question

Status: Open.

#100 In KrishnaswamyLab/scprep;

· scottgigante opened on Mar 17, 2020