ColiCoords 0.1.5

Features:

• Reading of 3D Daostorm super-resolution files by Hazen Babcock

Tests/bugfixes:

• Compatible with new symfit 0.5.1 API
• Added more test functions for various classes
• Updated docstrings
• Various small bugfixes

ColiCoords 0.1.4

Another 100 commits!

Features:

• Updated examples and docs
• Added perimeter transformation
• Added slider to IterCellPlot
• Added anglular distributions at cell's poles

Bugfixes:

• Various storm rendering fixes
• Binary image annotation bugfixes
• Many more small bugfixes

Other

• storm_weight for rendering storm now False by default

ColiCoords 0.1.3

New release of ColiCoords!

Features:

• Iterative plots are added in the iplot.py module (see example 05)
• Spatial distribution histogramming for storm data (plot_l_dist, plot_r_dist, plot_phi_dist)
• Various progress bars added to long calculations

Bugfixes:

• Missing import in support.py
• ModuleNotFoundError removed for future python 3.5 support
• Fixed rotate=None keyword argument for data_to_cells
• Fixed bugs associated with copying and indexing with synthetic cells

ColiCoords v0.1.2

The new release of ColiCoords with several added features:

• Refactoring of all optimization and fitting to now use symfit.
• Updated CNN module for run-time preprocessing with more options.
• GUI elements for manual segmentation to generate training data.
• Addition of Iterative plot classes to easily explore datasets.

Release version 0.1.1

Various bugfixes, updates to length axis distribution plotting, updated examples.

First stable release

Update __init__.py

updated version number

first alpha tag

still has the old gui code which will be refactored/removed