Dev

.github/pull_request_template.md

@@ -10,8 +10,7 @@ Please complete the following checklist when submitting a PR. The PR will not be
 
 - [ ] All new features include a unit test.
       Make sure that the tests passed and the coverage is
-      sufficient by running `python run_pytests.py --tests_folder=tests` or 
-      `pytest tests --cov=src --cov-report=term-missing`.
+      sufficient by running `pytest tests --cov=src --cov-report=term-missing`.
 - [ ] All new functions and code are clearly documented.
 - [ ] The code is formatted using Black.
       You can do this by running `black src tests`.

LICENSE

@@ -186,7 +186,7 @@
       same "printed page" as the copyright notice for easier
       identification within third-party archives.
 
-   Copyright 2024 Jérémie Gince
+   Copyright 2024 Jeremie Gince
 
    Licensed under the Apache License, Version 2.0 (the "License");
    you may not use this file except in compliance with the License.

README.md

@@ -47,7 +47,6 @@ The project is constituted by the following parts:
 - **.gitattributes**: This file is responsible for setting the git attributes of the project.
 - **.gitignore**: This file is responsible for ignoring the files that you don't want to commit to the repository.
    A basic one is already provided and should be enough for most of the projects.
-- **requirements.txt**: This file is responsible for listing the dependencies of the project.
 - **pyproject.toml**: This file is responsible for listing the dependencies of the project and the 
    configuration of the project.
 - **README.md**: This file is responsible for providing information about the project.
@@ -56,7 +55,6 @@ The project is constituted by the following parts:
    Feel free to remove it once you used it.
 - **setup.py**: This file is responsible for setting up the project.
 - **LICENSE**: This file is responsible for providing the license of the project.
-- **run_pytests.py**: This script is used by the github actions to run the tests.
 
 # README TEMPLATE
 
@@ -67,7 +65,8 @@ With `python` and `pip` installed, run the following commands to install the dep
 ```bash
 python -m venv .venv
 source .venv/bin/activate
-pip install -r requirements.txt
+pip install poetry
+python -m poetry install
 ```
 
 With `poetry` installed, run the following commands to install the dependencies:
@@ -126,4 +125,4 @@ python docker_files/build_image_and_run.py --mode=<mode>
 
 ## Citation
 ```
-```
+```

change_project_attributes.py

@@ -91,7 +91,7 @@ def update_init_file(args):
         content = re.sub(r'__email__ = "(.*?)"', f'__email__ = "{args.email}"', content)
     if args.url is not None:
         content = re.sub(r'__url__ = "(.*?)"', f'__url__ = "{args.url}"', content)
-    if args.pakage_name is not None:
+    if args.package_name is not None:
         content = re.sub(r'__package__ = "(.*?)"', f'__package__ = "{args.package_name}"', content)
     with open(init_file, "w") as f:
         f.write(content)
@@ -156,7 +156,7 @@ def update_license(args):
     with open("LICENSE", "r") as f:
         content = f.read()
     if args.author is not None:
-        content = re.sub(r'Copyright (.*?) (.*?)', f'Copyright {datetime.datetime.now().year} {args.author}', content)
+        content = re.sub(r'Copyright 2024 Jeremie Gince', f'Copyright {datetime.datetime.now().year} {args.author}', content)
     with open("LICENSE", "w") as f:
         f.write(content)
     return 0
@@ -217,4 +217,3 @@ def main():
 
 if __name__ == '__main__':
     sys.exit(main())
-

tests/__init__.py

@@ -1,15 +1,5 @@
 import numpy as np
-import pytest
 
 from .configs import TEST_SEED
 
 np.random.seed(TEST_SEED)
-
-
-def get_slow_test_mark():
-    from .configs import RUN_SLOW_TESTS
-
-    return pytest.mark.skipif(
-        not RUN_SLOW_TESTS,
-        reason=f"Only run when configs.{RUN_SLOW_TESTS} is True.",
-    )

tests/configs.py

@@ -1,4 +1,3 @@
-N_RANDOM_TESTS_PER_CASE = 10
 TEST_SEED = 42
 
 ATOL_MATRIX_COMPARISON = 1e-7
@@ -12,5 +11,3 @@
 
 ATOL_SHAPE_COMPARISON = 0
 RTOL_SHAPE_COMPARISON = 0
-
-RUN_SLOW_TESTS = True

tests/conftest.py

@@ -1,46 +0,0 @@
-import pytest
-
-from .configs import RUN_SLOW_TESTS
-
-RUN_SLOW_ARG_NAME = "run_slow"
-
-
-@pytest.hookimpl()
-def pytest_sessionstart(session):
-    pass
-
-
-# @pytest.hookimpl()
-# def pytest_sessionfinish(session, exitstatus):
-#     reporter = session.config.pluginmanager.get_plugin('terminalreporter')
-#     print('passed amount:', len(reporter.stats['passed']))
-
-
-def pytest_addoption(parser):
-    r"""
-    Add options to the pytest command.
-
-    See: https://jwodder.github.io/kbits/posts/pytest-mark-off/.
-
-    :param parser: The pytest parser.
-    :return: None
-    """
-    parser.addoption(
-        f"--{RUN_SLOW_ARG_NAME}",
-        action="store_true",
-        default=RUN_SLOW_TESTS,
-        help="Run slow tests",
-    )
-
-
-def pytest_collection_modifyitems(config, items):
-    if config.getoption(f"--{RUN_SLOW_ARG_NAME}"):
-        # if RUN_SLOW_TESTS:
-        #     print("Running slow tests")
-        pass
-    else:
-        # print("Skipping slow tests")
-        skipper = pytest.mark.skip(reason=f"Only run when '--{RUN_SLOW_ARG_NAME}=True' is given")
-        for item in items:
-            if "slow" in item.keywords:
-                item.add_marker(skipper)

tests/test_dummy.py

@@ -1,5 +1,4 @@
 import argparse
-import runpy
 
 import pytest