Main

.github/workflows/ci.yml

@@ -37,30 +37,25 @@ jobs:
         run: uvx twine check --strict dist/*
 
   lint:
-    name: Lint
+    name: lint
     runs-on: ubuntu-latest
-    defaults:
-      run:
-        shell: bash
-    timeout-minutes: 10
-
     steps:
       - name: Checkout repo
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
 
-      - name: Setup Python
-        uses: astral-sh/setup-uv@v5
+      - name: Setup pixi
+        uses: prefix-dev/setup-pixi@v0.9.2
         with:
-          enable-cache: false
+          pixi-version: v0.41.4
 
-      - name: Lint
-        run: uvx ruff check
+      - name: Check python lint
+        run: pixi run check-lint
 
-      - name: Check format
-        run: uvx ruff format --check
+      - name: Check python format
+        run: pixi run check-format
 
       - name: Check spelling
-        run: uvx codespell
+        run: pixi run check-spelling
 
   mf6adjCI:
     name: autotest
@@ -71,43 +66,41 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, windows-latest, macos-latest] 
-        #python-version: [3.8, 3.9, "3.10", "3.11"]
-        python-version: ["3.10"]
         run-type: [std]
         test-path: ["."]
-        #include:
-        #  - os: macos-latest
-        #    python-version: 3.9
     defaults:
       run:
-        shell: bash -l {0}
+        shell: bash
 
     steps:
     - name: Checkout repo
-      uses:  actions/checkout@v3 # checksout this repo
+      uses:  actions/checkout@v3 
 
-    # Setup conda env
-    - name: Install Conda environment using micromamba
-      uses: mamba-org/setup-micromamba@v1
+    - name: Setup pixi
+      uses: prefix-dev/setup-pixi@v0.9.3
       with:
-        environment-file: environment.yml
-        environment-name: mf6adj
-        cache-downloads: false
-        create-args: |
-          python=${{ matrix.python-version }}
+        pixi-version: v0.59.0
+
+    - name: pixi post-install
+      run: |
+        pixi run postinstall
 
+    - name: Update flopy
+      env:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}    
+      run: |
+        pixi run update-flopy
+
     - name: Install executables
       env:
         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}    
       run: |
-        get-modflow --subset mf6,libmf6,gridgen :python
+        pixi run install-executables        
 
     - name: Autotest ${{ matrix.os }}-python${{ matrix.python-version }}
-      working-directory: ./autotest
       run: |
-        pytest -v -n=auto --durations=0
+        pixi run autotest-base 
 
     - name: Test notebooks ${{ matrix.os }}-python${{ matrix.python-version }}
-      working-directory: ./examples
       run: |
-        pytest -v -n=auto --durations=0 --nbmake --nbmake-timeout=3000
+        pixi run autotest-notebooks

.gitignore

@@ -137,3 +137,4 @@ examples/freyberg/
 examples/sanpedro/
 examples/xd_box_chd_ana_working
 autotest/*_test*/
+.figures/

README.md

@@ -7,6 +7,12 @@
 
 `mamba env create -f environment.yml`
 
+Activate the environment and add the MODFLOW6 executables to the mamba environment bin with the following:
+
+`mamba activate mf6adj`
+
+`get-modflow --subset mf6,libmf6,gridgen :python`
+
 ## Examples
 
 Several notebooks are provide that demonstrate how to use `mf6adj`

autotest/conftest.py

@@ -0,0 +1,3 @@
+import pytest
+
+pytest_plugins = ["modflow_devtools.fixtures"]