本次实践使用的数据Direct Comparative Analyses of 10X Genomics Chromium and Smart-seq2,其中的10X genomics数据有四个,分别是直肠癌肝转移瘤,原发性直肠癌,肝细胞癌邻近非肿瘤组织,肝脏肿瘤。因此下载数据后开始使用CELLRANGER进行上游分析,进而使用seurat进行下游分析。
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