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Why the cell numbers in ArchR project differed from the results from cellranger-atac

bugSomething isn't workingSomething isn't working

Status: Open.

#2318 In GreenleafLab/ArchR;

· CampingOnSeabed opened on Dec 25, 2025

error occurred in addReproduciblePeakSet

bugSomething isn't workingSomething isn't working

Status: Open.

#2316 In GreenleafLab/ArchR;

· YunjieLi22 opened on Dec 12, 2025

Error: addGroupCoverages

bugSomething isn't workingSomething isn't working

Status: Open.

#2315 In GreenleafLab/ArchR;

· zeyan-0717 opened on Dec 1, 2025

cmdError in system2(path, "callpeak -h", stdout = TRUE, stderr = TRUE)

bugSomething isn't workingSomething isn't working

Status: Open.

#2314 In GreenleafLab/ArchR;

· aowenson-imm opened on Nov 24, 2025

Iterative overlap for peak merging

bugSomething isn't workingSomething isn't working

Status: Open.

#2313 In GreenleafLab/ArchR;

· plbngl opened on Sep 16, 2025

Inconsistent results from pseudo-time heatmap and UMAP embedding of peaks

bugSomething isn't workingSomething isn't working

Status: Open.

#2306 In GreenleafLab/ArchR;

· callmeracle opened on Jun 30, 2025

Error in doubScores function

bugSomething isn't workingSomething isn't working

Status: Open.

#2305 In GreenleafLab/ArchR;

· SergioManzano10 opened on Jun 11, 2025

beyond boundries when using addMotifAnnotations

bugSomething isn't workingSomething isn't working

Status: Open.

#2304 In GreenleafLab/ArchR;

· xmliu01 opened on May 23, 2025

ArchR complains about <code>nabor</code> package not available even if <code>nabor</code> is loaded

bugSomething isn't workingSomething isn't working

Status: Open.

#2302 In GreenleafLab/ArchR;

· JackieMium opened on Apr 28, 2025

TRJECTORY analysis -&lt; getMonocleTrajectories()

bugSomething isn't workingSomething isn't working

Status: Open.

#2297 In GreenleafLab/ArchR;

· A-legac45 opened on Apr 17, 2025

addArchRLogging(FALSE) Does not work

bugSomething isn't workingSomething isn't working

Status: Open.

#2296 In GreenleafLab/ArchR;

· dgodovich opened on Apr 9, 2025

How label Group list after integratin scRNA-seq and scATAC-seq data

bugSomething isn't workingSomething isn't working

Status: Open.

#2292 In GreenleafLab/ArchR;

· IqRaZaFaR16 opened on Apr 7, 2025