Update WORKSHOP_Markdown_16S_2021.Rmd#1
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westom21 wants to merge 1 commit intoFernandoLab:mainfrom
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Hi Guys, this is a little late, but I changed a few things for if we do this in the future. I changed the process by which you were creating ASV# labels by making a DNA stringset which is a refseq component of the phyloseq object that remembers which sequence belongs with which ASV instead of manually changing the tables. Also, I noticed that when you were creating your phyloseq object you were using the seqtable_mock_pipeline which is without chimera removal, so I changed it to to the count table seqtable_mock_pipelinge_nochi, unless I am missing something?
Thanks so much for putting this together!! Hope this helps, and ask me if you have any questions