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DepMap-Analytics

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  1. Comparative-Analysis Comparative-Analysis Public

    Scripts to perform analysis in Agreement between two large pan-cancer CRISPR-Cas9 gene dependency datasets

    Jupyter Notebook 13 8

  2. CoRe CoRe Public

    R package for the identification of core-fitness and common-essential genes from joint analyses of multiple genome-wide CRISPR-Cas9 screens

    Jupyter Notebook 9 4

  3. ADAM2 ADAM2 Public

    ADAM2 R package for identification of essential genes using genome-wide CRISPR-Cas9 screens

    R 5 1

  4. IntegratedCRISPR IntegratedCRISPR Public

    Code for integration and evaluation of Broad and Sanger Institutes CRISPR-Cas9 screens

    R 5 2

  5. HT29benchmark HT29benchmark Public

    R package for benchmarking genome-wide CRISPR-Cas9 knock-out viability screening pipelines making use of a reference dataset from six high-quality screens of the HT29 cell line

    TeX 2 3

  6. IntCRISPR IntCRISPR Public

    Functions for Integrating CRISPR profiles

    R 1

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