3 add full documentation

.github/workflows/build.yml

@@ -0,0 +1,60 @@
+name: CI/CD Pipeline
+
+on:
+  push:
+    branches: [ main, dev, 7-feat-add-workflow-ci ]
+  pull_request:
+    branches: [ main, dev, 7-feat-add-workflow-ci ]
+
+jobs:
+  test-and-build:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v3
+
+    - name: Set up Node.js
+      uses: actions/setup-node@v3
+      with:
+        node-version: '18'
+
+    # Install and test client
+    - name: Install client dependencies
+      working-directory: ./client
+      run: |
+        npm install
+        npm run build
+
+    - name: Run client tests
+      working-directory: ./client
+      run: |
+        npm test -- --passWithNoTests --no-watch
+
+    - name: Run client linting
+      working-directory: ./client
+      run: |
+       rm -rf build/
+       npm run lint -- --quiet || echo "Linting issues found, but continuing build"
+
+    # Install and test server
+    - name: Install server dependencies
+      working-directory: ./server
+      run: npm install
+
+    # Build server (if needed)
+    - name: Build server
+      working-directory: ./server
+      run: npm run build || echo "No build script found, skipping"
+
+  deploy:
+    needs: test-and-build
+    runs-on: ubuntu-latest
+    if: github.ref == 'refs/heads/main'
+
+    steps:
+    - uses: actions/checkout@v3
+
+    - name: Set up Node.js
+      uses: actions/setup-node@v3
+      with:
+        node-version: '18'

README.md

@@ -1,57 +1,275 @@
-# CoreTrace Web Interface
+# CoreTrace Web Application
 
-A web-based interface for the CoreTrace tool that uses WebAssembly for core functionality.
+A full-stack web application for analyzing C/C++ code using various static and dynamic analysis tools. The application provides a modern web interface for uploading code, configuring analysis options, and viewing security findings.
 
-## Prerequisites
+## Features
 
-- [Node.js](https://nodejs.org/) (v16 or higher)
+- **Code Analysis**: Analyze C/C++ code using multiple tools (flawfinder, cppcheck, etc.)
+- **Sandboxed Execution**: Secure code analysis in isolated environments
+- **Modern UI**: React-based interface with Monaco Editor for code editing
+- **Real-time Results**: View analysis results with syntax highlighting
+- **Tool Selection**: Choose which analysis tools to use
+- **Example Code**: Pre-built examples for testing and learning
 
-## Getting Started
+## Architecture
 
-These instructions will help you set up the project locally for development and testing purposes.
+### Backend (Node.js/Express)
+- **Server**: Express.js REST API
+- **Analysis Engine**: Custom analyzer with tool integration
+- **Sandboxing**: Multiple isolation methods (Firejail, QEMU, Bubblewrap)
+- **Job Management**: Asynchronous analysis job handling
+- **Logging**: Structured logging with Winston
+
+### Frontend (React)
+- **UI Framework**: React with Tailwind CSS
+- **Code Editor**: Monaco Editor with syntax highlighting
+- **State Management**: React Context for application state
+- **API Integration**: Axios for backend communication
+
+## Quick Start
+
+### Prerequisites
+
+- Node.js 16+ 
+- npm or yarn
+- Linux environment (for sandboxing tools)
+- Firejail (recommended) or QEMU
 
 ### Installation
 
-1. Clone the repository:
+1. **Clone the repository**
+   ```bash
+   git clone <repository-url>
+   cd coretrace-web
+   ```
+
+2. **Install backend dependencies**
+   ```bash
+   cd server
+   npm install
+   ```
+
+3. **Install frontend dependencies**
+   ```bash
+   cd ../client
+   npm install
+   ```
+
+4. **Start the development servers**
+   ```bash
+   # Terminal 1 - Backend
+   cd server
+   npm run dev
+
+   # Terminal 2 - Frontend
+   cd client
+   npm start
+   ```
+
+5. **Access the application**
+   - Frontend: http://localhost:3000
+   - Backend API: http://localhost:5000
+
+## Documentation
+
+### API Documentation
+
+Comprehensive API documentation is available in [`server/API_DOCUMENTATION.md`](server/API_DOCUMENTATION.md).
+
+**Key Endpoints:**
+- `POST /api/analyze` - Analyze code files
+- `GET /api/tools` - Get available analysis tools
+- `GET /api/examples` - Get example code snippets
+
+### Code Documentation
+
+#### Backend Documentation
+
+The backend code is documented using JSDoc. Generate documentation by running:
+
 ```bash
-git clone <repository-url>
-cd ctrace-web
+cd server
+npm run docs
 ```
 
-2. Install dependencies for the client:
-```bash
-cd client
-npm install
+Then open `server/docs/index.html` in your browser.
+
+**Documented Modules:**
+- **Services**: Analyzer, JobManager, Logger, Sandbox, SARIF Parser
+- **Routes**: Analysis, Examples, Tools endpoints
+- **Controllers**: Request handling and validation
+- **Configuration**: Environment and sandbox settings
+
+#### Frontend Documentation
+
+Frontend components are documented with JSDoc comments:
+
+**Key Components:**
+- `App.jsx` - Main application component
+- `AnalysisContext.jsx` - State management context
+- `ApiService` - Backend communication
+- Editor components for code editing and results display
+
+### Architecture Documentation
+
+#### Backend Architecture
+
+```
+server/
+├── services/          # Business logic
+│   ├── analyzer.js    # Main analysis orchestrator
+│   ├── jobManager.js  # Job lifecycle management
+│   ├── sandbox.js     # Execution isolation
+│   ├── logger.js      # Logging service
+│   └── sarifParser.js # Result parsing
+├── routes/            # API endpoints
+├── controllers/       # Request handlers
+├── middlewares/       # Express middleware
+└── config/           # Configuration
 ```
 
-3. Install dependencies for the server:
-```bash
-cd server
-npm install
+#### Frontend Architecture
+
+```
+client/src/
+├── components/        # React components
+│   └── Editor/       # Code editor components
+├── context/          # React context
+├── services/         # API services
+└── App.jsx          # Main component
 ```
 
-### Running the Development Server
+## Configuration
+
+### Backend Configuration
+
+Edit `server/config/index.js` to customize:
+
+- **Sandbox Settings**: Memory limits, timeouts, isolation methods
+- **File Limits**: Maximum file sizes and counts
+- **Job Management**: Cleanup delays and retention periods
+- **Logging**: Log levels and formats
+
+### Environment Variables
+
+**Backend:**
+- `PORT` - Server port (default: 5000)
+- `NODE_ENV` - Environment mode
+- `QEMU_BINARY` - QEMU binary path
+- `QEMU_LIB_ROOT` - QEMU library root
+
+**Frontend:**
+- `REACT_APP_API_URL` - Backend API URL
+
+## Development
+
+### Backend Development
 
-Start the development server with:
 ```bash
 cd server
-npm run dev
+npm run dev          # Start with nodemon
+npm run docs         # Generate documentation
+npm test             # Run tests
 ```
 
-### Running the Client
-In a separate terminal, start the client:
+### Frontend Development
+
 ```bash
 cd client
-npm run start
+npm start            # Start development server
+npm test             # Run tests
+npm run build        # Build for production
 ```
 
-## Project Structure
+### Adding New Analysis Tools
+
+1. **Backend Integration**
+   - Add tool binary to `server/bin/`
+   - Update `services/analyzer.js` to include new tool
+   - Add tool configuration to `config/index.js`
+
+2. **Frontend Integration**
+   - Update tool selection UI in `components/Editor/`
+   - Add tool-specific result display logic
+
+### Documentation Standards
+
+#### JSDoc Comments
+
+Use standard JSDoc format for all functions and classes:
+
+```javascript
+/**
+ * @function functionName
+ * @description Brief description of what the function does
+ * @param {string} paramName - Description of parameter
+ * @returns {Promise<Object>} Description of return value
+ * @throws {Error} Description of when error is thrown
+ */
+```
+
+#### API Documentation
+
+- Update `server/API_DOCUMENTATION.md` for new endpoints
+- Include request/response examples
+- Document error scenarios
+
+## Deployment
+
+### Docker Deployment
+
+```bash
+# Build and run with Docker Compose
+docker-compose up --build
+```
+
+### Production Considerations
+
+- **Security**: Implement authentication and rate limiting
+- **Monitoring**: Add application monitoring and logging
+- **Scaling**: Consider job queue systems for high load
+- **Backup**: Implement data backup strategies
+
+## Troubleshooting
+
+### Common Issues
+
+1. **Sandbox Failures**
+   - Ensure Firejail is installed: `sudo apt install firejail`
+   - Check file permissions in sandbox directories
+   - Verify resource limits in configuration
+
+2. **Analysis Tool Errors**
+   - Verify tool binaries are executable
+   - Check tool dependencies are installed
+   - Review tool-specific error logs
+
+3. **API Connection Issues**
+   - Verify backend server is running
+   - Check CORS configuration
+   - Ensure correct API URL in frontend
+
+### Logs
+
+- **Backend**: Check `server/combined.log` and `server/error.log`
+- **Frontend**: Browser developer console
+- **Sandbox**: Check system logs for sandbox-related errors
+
+## Contributing
+
+1. Fork the repository
+2. Create a feature branch
+3. Add tests for new functionality
+4. Update documentation
+5. Submit a pull request
+
+## License
 
-- `client/` - Contains the React frontend application.
-- `server/` - Contains the Node.js backend server.
+[Add your license information here]
 
-## Technologies Used
+## Support
 
-- React
-- WebAssembly
-- Tailwind CSS
+For issues and questions:
+- Create an issue in the repository
+- Check the documentation
+- Review the troubleshooting section

client/.eslintignore

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+node_modules/
+build/
+dist/
+coverage/
+postcss.config.js
+tailwind.config.js