Skip to content

revert post-zoonomia outgroup changes #1877

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
glennhickey wants to merge 1 commit into
base: master
Choose a base branch
from
Open

revert post-zoonomia outgroup changes #1877

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions src/cactus/cactus_progressive_config.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -516,10 +516,10 @@
<!-- max_num_outgroups: maximum number of outgroups per alignment job-->
<!-- extra_chrom_outgroups: if max_num_outgroups is not sufficent to satisfy sex chromosome requirements of an ancestor while still using nearest species, allow up to this many extra (when -1 set to the number of unique sex chromosomes for the ancestor). -->
<outgroup
strategy="greedyLeavesPreference"
strategy="greedyPreference"
threshold="0"
ancestor_quality_fraction="0.75"
max_num_outgroups="2"
max_num_outgroups="3"
extra_chrom_outgroups="-1"
/>

Expand Down