[WIP] update notebooks

README.md

@@ -7,12 +7,7 @@ Available at: [climag.readthedocs.io](https://climag.readthedocs.io/).
 
 ## Acknowledgements
 
-ClimAg is a three-year research project funded by the [Environmental Protection Agency (EPA)](https://www.epa.ie/) under the Climate Change Research Programme grant number 2018-CCRP-MS.50, with additional funding provided under the COVID-19 research support scheme of the [Higher Education Authority](https://hea.ie/).
-
-The Python implementation of the [ModVege](https://code.europa.eu/agri4cast/modvege) pasture model adapted for use in this project was translated from Java to Python by Y. Chemin of [JRC Ispra](https://joint-research-centre.ec.europa.eu/jrc-sites-across-europe/jrc-ispra-italy_en).
-This Python implementation was originally published as public domain software on GitHub under the [Unlicence license](https://github.com/ClimAg/modvege).
-The Java model was provided by R. Martin of [INRAE](https://www.inrae.fr/en) UREP Clermont-Ferrand for the original Python implementation.
-The original ModVege pasture model was developed by [Jouven *et al.*](https://doi.org/10.1111/j.1365-2494.2006.00515.x).
+ClimAg is a three-year research project funded by the [Environmental Protection Agency (EPA)](https://www.epa.ie/) (Ireland) under the Climate Change Research Programme grant number 2018-CCRP-MS.50, with additional funding provided under the COVID-19 research support scheme of the [Higher Education Authority](https://hea.ie/) (Ireland).
 
 ## Licence
 

climate_data/mera/mera_data_et.ipynb

@@ -5,7 +5,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "# Met Éireann Reanalysis - Evapotranspiration\n",
+    "# Met Éireann Reanalysis - evapotranspiration\n",
     "\n",
     "Derive evapotranspiration using the FAO Penman-Monteith equation"
    ]
@@ -46,12 +46,12 @@
    "source": [
     "# list of variables needed to derive ET\n",
     "var_dirs = [\n",
-    "    \"1_105_0_0\",  # surface pressure\n",
-    "    \"15_105_2_2\",  # max temperature\n",
-    "    \"16_105_2_2\",  # min temperature\n",
+    "    \"1_105_0_0\",    # surface pressure\n",
+    "    \"15_105_2_2\",   # max temperature\n",
+    "    \"16_105_2_2\",   # min temperature\n",
     "    \"33_105_10_0\",  # u-component of 10 m wind\n",
     "    \"34_105_10_0\",  # v-component of 10 m wind\n",
-    "    \"52_105_2_0\",  # 2 m relative humidity\n",
+    "    \"52_105_2_0\",   # 2 m relative humidity\n",
     "    \"111_105_0_4\",  # net shortwave irradiance\n",
     "    \"112_105_0_4\",  # net longwave irradiance\n",
     "]"

future_risk/anomalies_autumn_grass_growth.ipynb

@@ -701,7 +701,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3.10.6 ('ClimAg')",
+   "display_name": ".venv",
    "language": "python",
    "name": "python3"
   },
@@ -716,11 +716,6 @@
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
    "version": "3.11.0"
-  },
-  "vscode": {
-   "interpreter": {
-    "hash": "c4e659d1bedfc73d1fd31d7c0e2c79d7cc7aac22204994016c65a9e44686eb91"
-   }
   }
  },
  "nbformat": 4,

index.rst

@@ -23,27 +23,36 @@ This research project was carried out at the `Environmental Research Institute (
 Team
 ----
 
-* `Dr. Paul Leahy <https://research.ucc.ie/profiles/D012/paulleahy>`_ (School of Engineering & Architecture)
-* `Dr. Kieran Hickey <https://research.ucc.ie/profiles/A010/kieranhickey>`_ (Department of Geography)
-* `Prof. Astrid Wingler <https://research.ucc.ie/profiles/D026/astridwingler>`_ (School of Biological, Earth & Environmental Sciences)
-* `Nithiya Streethran <https://research.ucc.ie/profiles/D012/nstreethran>`_
+* `Dr. Paul Leahy <https://research.ucc.ie/profiles/paul.leahy@ucc.ie>`_ (School of Engineering & Architecture)
+* `Dr. Kieran Hickey <https://research.ucc.ie/profiles/kieran.hickey@ucc.ie>`_ (Department of Geography)
+* `Prof. Astrid Wingler <https://research.ucc.ie/profiles/astrid.wingler@ucc.ie>`_ (School of Biological, Earth & Environmental Sciences)
+* `Nithiya Streethran <https://github.com/nmstreethran>`_
 
-Publications
-------------
-
-Poster
+Alumni
 ++++++
 
-#. Nolan, C. G., Leahy, P. G., Hickey, K., and Wingler, A. (2021) ‘Risk of Drought-Related “Fodder Crises” in Irish Agriculture under mid-21st Century Climatic Conditions’. *Irish National Hydrology Conference*, Athlone, November. Available at: https://hydrologyireland.ie/wp-content/uploads/2021/12/03-Paul-Leahy-NHC_ClimAg_A0_Poster_Leahy.pdf (Accessed: 3 June 2022).
-#. Leahy, P. G., Streethran, N., Hickey, K., and Wingler, A. (2022) ‘Increased severity and frequency of fodder production deficits under future climate conditions in Ireland’. *International Symposium on Climate-Resilient Agri-Environmental Systems*, Dublin, 29 August. Available at: https://www.iscraes.org/wp-content/uploads/2023/01/Paul-Leahy-Poster-grassland-poster-ISCRAES-2022.pdf (Accessed: 27 March 2023).
+* Eva Kling (Intern, Polytech Montpellier)
+* Cathal Nolan (Researcher, Department of Geography)
+
+Research Outputs
+----------------
+
+#. Streethran, N., Hickey, K., Wingler, A., and Leahy, P. (2024). *ClimAg: Multifactorial Causes of Fodder Crises in Ireland and Risks due to Climate Change*. Johnstown Castle: Environmental Protection Agency (EPA Research Report, 464). Available at: https://www.epa.ie/publications/research/climate-change/research-464 (Accessed: 17 October 2024).
+#. Wingler, A., Streethran, N., Hickey, K., and Leahy, P. (2024). ‘Multifactorial drivers of fodder crises in Irish temperate pastures and risks due to climate change’, *Biology and Environment: Proceedings of the Royal Irish Academy*, 124B(2–3), pp. 91–102. Available at: https://doi.org/10.1353/bae.2024.a945364.
+#. Leahy, P., Streethran, N., Hickey, K., and Wingler, A. (2024). ‘Grass production and fodder deficits in Ireland under projected mid-century climatic conditions’. *The 3rd International Symposium on Climate-Resilient Agri-Environmental Systems*, Dublin, 26 June. Available at: https://doi.org/10.13140/RG.2.2.19287.48809.
+#. Leahy, P. G., Streethran, N., Hickey, K., and Wingler, A. (2022). ‘Increased severity and frequency of fodder production deficits under future climate conditions in Ireland’. *The 2nd International Symposium on Climate-Resilient Agri-Environmental Systems*, Dublin, 29 August. Available at: https://www.iscraes.org/wp-content/uploads/2023/01/Paul-Leahy-Poster-grassland-poster-ISCRAES-2022.pdf (Accessed: 27 March 2023).
+#. Nolan, C. G., Leahy, P. G., Hickey, K., and Wingler, A. (2021). ‘Risk of Drought-Related “Fodder Crises” in Irish Agriculture under mid-21st Century Climatic Conditions’. *Irish National Hydrology Conference*, Athlone, November. Available at: https://hydrologyireland.ie/wp-content/uploads/2021/12/03-Paul-Leahy-NHC_ClimAg_A0_Poster_Leahy.pdf (Accessed: 3 June 2022).
 
 Acknowledgements
 ----------------
 
 .. _jouven: https://doi.org/10.1111/j.1365-2494.2006.00515.x
 .. |jouven| replace:: Jouven *et al.*
 
-ClimAg is a three-year research project funded by the `Environmental Protection Agency (EPA) <https://www.epa.ie/>`_ under the Climate Change Research Programme grant number 2018-CCRP-MS.50, with additional funding provided under the COVID-19 research support scheme of the `Higher Education Authority (HEA) <https://hea.ie/>`_.
+ClimAg is a three-year research project funded by the `Environmental Protection Agency (EPA) <https://www.epa.ie/>`_ (Ireland) under the Climate Change Research Programme grant number 2018-CCRP-MS.50, with additional funding provided under the COVID-19 research support scheme of the `Higher Education Authority (HEA) <https://hea.ie/>`_ (Ireland).
+
+The authors acknowledge the inputs of the ClimAg project steering committee members throughout the project.
+The authors thank Eoin Whelan (`Met Éireann <https://www.met.ie/>`_, Dublin, Ireland), Paul Nolan (`Irish Centre for High-End Computing <https://www.ichec.ie/>`_, Dublin, Ireland), and Elodie Ruelle (`Teagasc <https://www.teagasc.ie/animals/dairy/moorepark/>`_, Moorepark, Ireland) for providing datasets used in this study.
 
 The Python implementation of the `ModVege <https://code.europa.eu/agri4cast/modvege>`_ pasture model adapted for use in this project was translated from Java to Python by Y. Chemin of `JRC Ispra <https://joint-research-centre.ec.europa.eu/jrc-sites-across-europe/jrc-ispra-italy_en>`_.
 This Python implementation was originally published as public domain software on GitHub under the `Unlicence license <https://github.com/ClimAg/modvege>`_.
@@ -58,8 +67,9 @@ Code is licensed under the `Apache License, Version 2.0 <https://www.apache.org/
 Links
 -----
 
-- GitHub organisation: https://github.com/ClimAg
 - `Landing page <https://www.ucc.ie/en/eel/projects/climag/>`_
+- GitHub: https://github.com/ClimAg
+- `Documentation <https://climag.readthedocs.io/>`_
 - `X <https://x.com/climatt_project>`_
 - `Zotero library <https://www.zotero.org/groups/4706660/climag/library>`_