Bump the all group across 1 directory with 4 updates

[dependabot]

Bumps the all group with 4 updates in the / directory: h5py, numpy, pytest and ruamel-yaml.

Updates h5py from 3.14.0 to 3.15.1

Release notes

Sourced from h5py's releases.

3.15.1

No release notes provided.

3.15.0

See https://docs.h5py.org/en/latest/whatsnew/3.15.html for release notes

Commits

• fad034c Merge pull request #2727 from takluyver/prepare-3.15.1
• 435015d Version number -> 3.15.1
• 3cf3343 Add release note for 3.15.1
• c4d3394 Merge pull request #2725 from crusaderky/test_lowlevel_vds
• a0a707f Merge pull request #2722 from neutrinoceros/whl/fix-hdf5-macosx-deployment-ta...
• b30f4fa WHL: build HDF5 with backward compatible system APIs on macOS
• eff7fa8 TST: File hygiene in test_lowlevel_vds
• dffdd1a Merge pull request #2723 from takluyver/ci/gh-release-non-draft
• 9f67594 Merge pull request #2724 from h5py/dependabot/github_actions/actions-e74af9633e
• 0e82857 Build(deps): Bump softprops/action-gh-release in the actions group
• Additional commits viewable in compare view

Updates numpy from 2.0.2 to 2.4.0

Release notes

Sourced from numpy's releases.

2.4.0 (Dec 20, 2025)

NumPy 2.4.0 Release Notes

The NumPy 2.4.0 release continues the work to improve free threaded Python support, user dtypes implementation, and annotations. There are many expired deprecations and bug fixes as well.

This release supports Python versions 3.11-3.14

Highlights

Apart from annotations and same_value kwarg, the 2.4 highlights are mostly of interest to downstream developers. They should help in implementing new user dtypes.

• Many annotation improvements. In particular, runtime signature introspection.
• New casting kwarg 'same_value' for casting by value.
• New PyUFunc_AddLoopsFromSpec function that can be used to add user sort loops using the ArrayMethod API.
• New __numpy_dtype__ protocol.

Deprecations

Setting the strides attribute is deprecated

Setting the strides attribute is now deprecated since mutating an array is unsafe if an array is shared, especially by multiple threads. As an alternative, you can create a new view (no copy) via:

• np.lib.stride_tricks.strided_window_view if applicable,
• np.lib.stride_tricks.as_strided for the general case,
• or the np.ndarray constructor (buffer is the original array) for a light-weight version.

(gh-28925)

Positional out argument to np.maximum, np.minimum is deprecated

Passing the output array out positionally to numpy.maximum and numpy.minimum is deprecated. For example, np.maximum(a, b, c) will emit a deprecation warning, since c is treated as the output buffer rather than a third input.

Always pass the output with the keyword form, e.g. np.maximum(a, b, out=c). This makes intent clear and simplifies type annotations.

(gh-29052)

align= must be passed as boolean to np.dtype()

... (truncated)

Changelog

Sourced from numpy's changelog.

Update 2.4.0 milestones

Look at the issues/prs with 2.4.0 milestones and either push them off to a later version, or maybe remove the milestone. You may need to add a milestone.

Check the numpy-release repo

The things to check are the cibuildwheel version in .github/workflows/wheels.yml and the openblas versions in openblas_requirements.txt.

Make a release PR

Four documents usually need to be updated or created for the release PR:

• The changelog
• The release notes
• The .mailmap file
• The pyproject.toml file

These changes should be made in an ordinary PR against the maintenance branch. Other small, miscellaneous fixes may be part of this PR. The commit message might be something like::

REL: Prepare for the NumPy 2.4.0 release

Create 2.4.0-changelog.rst.
Update 2.4.0-notes.rst.
Update .mailmap.
Update pyproject.toml

Set the release version

Check the pyproject.toml file and set the release version and update the classifier if needed::

$ gvim pyproject.toml

Check the doc/source/release.rst file

make sure that the release notes have an entry in the release.rst file::

... (truncated)

Commits

• c5ab79c Merge pull request #30487 from charris/prepare-2.4.0.2
• 05e379a REL: Prepare for the NumPy 2.4.0 release (2)
• 485f1c4 REL: Prepare for the NumPy 2.4.0 release (1) (#30486)
• c683481 REL: Prepare for the NumPy 2.4.0 release (#30439)
• 11d9ed2 Merge pull request #30459 from charris/backport-30456
• 2a17ddb TYP: restore generic.__hash__ (#30456)
• d04a429 Merge pull request #30432 from charris/backport-30426
• f94a148 fix more data races in mtrand.pyx (#30426)
• 06a9d42 Merge pull request #30420 from charris/backport-30418
• 30819cd Merge pull request #30419 from charris/backport-30373
• Additional commits viewable in compare view

Updates pytest from 8.4.2 to 9.0.2

Release notes

Sourced from pytest's releases.

9.0.2

pytest 9.0.2 (2025-12-06)

Bug fixes

• #13896: The terminal progress feature added in pytest 9.0.0 has been disabled by default, except on Windows, due to compatibility issues with some terminal emulators.

  You may enable it again by passing -p terminalprogress. We may enable it by default again once compatibility improves in the future.

  Additionally, when the environment variable TERM is dumb, the escape codes are no longer emitted, even if the plugin is enabled.

• #13904: Fixed the TOML type of the tmp_path_retention_count settings in the API reference from number to string.

• #13946: The private config.inicfg attribute was changed in a breaking manner in pytest 9.0.0. Due to its usage in the ecosystem, it is now restored to working order using a compatibility shim. It will be deprecated in pytest 9.1 and removed in pytest 10.

• #13965: Fixed quadratic-time behavior when handling unittest subtests in Python 3.10.

Improved documentation

• #4492: The API Reference now contains cross-reference-able documentation of pytest's command-line flags <command-line-flags>.

9.0.1

pytest 9.0.1 (2025-11-12)

Bug fixes

• #13895: Restore support for skipping tests via raise unittest.SkipTest.
• #13896: The terminal progress plugin added in pytest 9.0 is now automatically disabled when iTerm2 is detected, it generated desktop notifications instead of the desired functionality.
• #13904: Fixed the TOML type of the verbosity settings in the API reference from number to string.
• #13910: Fixed UserWarning: Do not expect file_or_dir on some earlier Python 3.12 and 3.13 point versions.

Packaging updates and notes for downstreams

• #13933: The tox configuration has been adjusted to make sure the desired version string can be passed into its package_env through the SETUPTOOLS_SCM_PRETEND_VERSION_FOR_PYTEST environment variable as a part of the release process -- by webknjaz.

Contributor-facing changes

• #13891, #13942: The CI/CD part of the release automation is now capable of creating GitHub Releases without having a Git checkout on disk -- by bluetech and webknjaz.
• #13933: The tox configuration has been adjusted to make sure the desired version string can be passed into its package_env through the SETUPTOOLS_SCM_PRETEND_VERSION_FOR_PYTEST environment variable as a part of the release process -- by webknjaz.

... (truncated)

Commits

• 3d10b51 Prepare release version 9.0.2
• 188750b Merge pull request #14030 from pytest-dev/patchback/backports/9.0.x/1e4b01d1f...
• b7d7bef Merge pull request #14014 from bluetech/compat-note
• bd08e85 Merge pull request #14013 from pytest-dev/patchback/backports/9.0.x/922b60377...
• bc78386 Add CLI options reference documentation (#13930)
• 5a4e398 Fix docs typo (#14005) (#14008)
• d7ae6df Merge pull request #14006 from pytest-dev/maintenance/update-plugin-list-tmpl...
• 556f6a2 pre-commit: fix rst-lint after new release (#13999) (#14001)
• c60fbe6 Fix quadratic-time behavior when handling unittest subtests in Python 3.10 ...
• 73d9b01 Merge pull request #13995 from nicoddemus/patchback/backports/9.0.x/1b5200c0f...
• Additional commits viewable in compare view

Updates ruamel-yaml from 0.18.15 to 0.19.1

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[dependabot]

Looks like these dependencies are updatable in another way, so this is no longer needed.