javascript to export table data as .xls file

htdocs/Language/default.php

@@ -217,7 +217,9 @@
 		"HEIGHT" => "Height",
 		"FONT_SIZE" => "Font Size",
 		"COL_COUNT" => "Column-Count",
-		"CMD_REFRESH" => "Refresh"
+		"CMD_REFRESH" => "Refresh",
+		"SPECIMEN_CUSTOM_FIELDS" => "Specimen Custom Fields",
+		"PATIENT_CUSTOM_FIELDS" => "Patient Custom Fields"
 	) ,
 	"header" => array (
 		"TITLE" => "",
@@ -563,7 +565,7 @@
 		"TIPS_SPECIMEN" => "Select Specimen to view Report of all tests done on it",
 		"TIPS_TESTRECORDS" => "Select Site, Test Type, Date Interval and Fields to print Test Records.",
 		"TIPS_PENDINGTESTS" => "Select Site and Test Type to view tests pending at the site.",
-		"TIPS_DAILYLOGS" => "Print all records handled on a given day.",
+		"TIPS_DAILYLOGS" => "View/Print all records handled on a given day.",
 		"TIPS_INFECTIONSUMMARY" => "Select facility and date range to view infection graph and prevalence rates.",
 		"TIPS_COUNTS" => "Select Site and Date Interval to view number of Specimens or Tests Handled over the specified duration.",
 		"TIPS_TAT" => "Select Site and Date Interval to view average test-wise Turn around Times over the specified duration.",

htdocs/Language/en.php

@@ -217,7 +217,9 @@
 		"HEIGHT" => "Height",
 		"FONT_SIZE" => "Font Size",
 		"COL_COUNT" => "Column-Count",
-		"CMD_REFRESH" => "Refresh"
+		"CMD_REFRESH" => "Refresh",
+		"SPECIMEN_CUSTOM_FIELDS" => "Specimen Custom Fields",
+		"PATIENT_CUSTOM_FIELDS" => "Patient Custom Fields"
 	) ,
 	"header" => array (
 		"TITLE" => "",
@@ -563,7 +565,7 @@
 		"TIPS_SPECIMEN" => "Select Specimen to view Report of all tests done on it",
 		"TIPS_TESTRECORDS" => "Select Site, Test Type, Date Interval and Fields to print Test Records.",
 		"TIPS_PENDINGTESTS" => "Select Site and Test Type to view tests pending at the site.",
-		"TIPS_DAILYLOGS" => "Print all records handled on a given day.",
+		"TIPS_DAILYLOGS" => "View/Print all records handled on a given day.",
 		"TIPS_INFECTIONSUMMARY" => "Select facility and date range to view infection graph and prevalence rates.",
 		"TIPS_COUNTS" => "Select Site and Date Interval to view number of Specimens or Tests Handled over the specified duration.",
 		"TIPS_TAT" => "Select Site and Date Interval to view average test-wise Turn around Times over the specified duration.",

htdocs/export/export_to_excel.php

@@ -55,6 +55,8 @@
 $end_date = intval($_REQUEST['yyyy_to'])."-".intval($_REQUEST['mm_to'])."-".intval($_REQUEST['dd_to']);
 
 $test_type_ids = $_REQUEST['test_types'];
+$patient_custom_fields = $_REQUEST['patient_custom_fields'];
+$specimen_custom_fields = $_REQUEST['specimen_custom_fields'];
 
 $include_name = ($_REQUEST["include_patient_name"] == "true");
 $include_sex = ($_REQUEST["include_patient_sex"] == "true");
@@ -100,6 +102,20 @@
     "t.ts AS test_timestamp"
 );
 
+db_change($lab['db_name']);
+
+foreach($patient_custom_fields as $patient_custom_field_id) {
+    $field_name = get_custom_field_name_patient($patient_custom_field_id);
+    array_push($headers, $field_name);
+    array_push($fields, "pcd.field_value");
+}
+
+foreach($specimen_custom_fields as $specimen_custom_field_id) {
+    $field_name = get_custom_field_name_specimen($specimen_custom_field_id);
+    array_push($headers, $field_name);
+    array_push($fields, "scd.field_value");
+}
+
 // Push additional field for test result - the headers for this will be generated separately
 // Must be the last field! There is logic in the loop below that depends on it.
 array_push($fields, "t.result AS test_result");
@@ -118,15 +134,15 @@
         INNER JOIN specimen_type AS st ON s.specimen_type_id = st.specimen_type_id
         INNER JOIN test AS t ON s.specimen_id = t.specimen_id
         INNER JOIN patient AS p ON s.patient_id = p.patient_id
+        LEFT JOIN patient_custom_data AS pcd ON p.patient_id = pcd.patient_id
+        LEFT JOIN specimen_custom_data AS scd ON s.specimen_id = scd.specimen_id
         WHERE s.date_collected BETWEEN '$start_date' AND '$end_date'
         AND t.test_type_id = '$test_type_id';
 EOQ;
 
 
     $sheet = $objPHPExcel->createSheet();
 
-    db_change($lab['db_name']);
-
     // Grab all the measures for this test type from the database.
     $test_type = TestType::getById($test_type_id, $lab['lab_config_id']);
 

htdocs/export/export_to_excel_get_custom_patient_fields.php

@@ -0,0 +1,49 @@
+<?php
+
+require_once("../includes/composer.php");
+require_once("../includes/db_lib.php");
+require_once("../includes/db_util.php");
+require_once("../includes/user_lib.php");
+
+$lab_id = intval($_REQUEST['lab_config_id']);
+if (!$lab_id) {
+    header('HTTP/1.1 404 Not Found', true, 404);
+    echo "[]";
+    exit;
+}
+
+$current_user_id = $_SESSION['user_id'];
+$current_user = get_user_by_id($current_user_id);
+
+$unauthorized = true;
+
+if (is_super_admin($current_user) || is_country_dir($current_user)) {
+    $unauthorized = false;
+}
+
+if ($unauthorized) {
+    // If the user is not a super admin or country director, they should only
+    // be able to access data for their own lab, and only if they are an admin.
+    if ($lab_id == $current_user->labConfigId && is_admin($current_user)) {
+        $unauthorized = false;
+    }
+}
+
+if ($unauthorized) {
+    header('HTTP/1.1 401 Unauthorized', true, 401);
+    echo "You do not have permission to view this page.";
+    exit;
+}
+
+
+$lab_config = LabConfig::getById($lab_id);
+$custom_field_list = $lab_config->getPatientCustomFields();
+
+foreach($custom_field_list as $idx => $custom_field) {
+    echo '{ "id": '.$custom_field->id.', "fieldName": "'.$custom_field->fieldName.'" }';
+    if ($idx < count($output_fields) - 1) {
+        echo ",\n";
+    }
+}
+
+echo "\n]";

htdocs/export/export_to_excel_get_custom_specimen_fields.php

@@ -0,0 +1,49 @@
+<?php
+
+require_once("../includes/composer.php");
+require_once("../includes/db_lib.php");
+require_once("../includes/db_util.php");
+require_once("../includes/user_lib.php");
+
+$lab_id = intval($_REQUEST['lab_config_id']);
+if (!$lab_id) {
+    header('HTTP/1.1 404 Not Found', true, 404);
+    echo "[]";
+    exit;
+}
+
+$current_user_id = $_SESSION['user_id'];
+$current_user = get_user_by_id($current_user_id);
+
+$unauthorized = true;
+
+if (is_super_admin($current_user) || is_country_dir($current_user)) {
+    $unauthorized = false;
+}
+
+if ($unauthorized) {
+    // If the user is not a super admin or country director, they should only
+    // be able to access data for their own lab, and only if they are an admin.
+    if (count($lab_ids) == 1 && $lab_ids[0] == $current_user->labConfigId && is_admin($current_user)) {
+        $unauthorized = false;
+    }
+}
+
+if ($unauthorized) {
+    header('HTTP/1.1 401 Unauthorized', true, 401);
+    echo "You do not have permission to view this page.";
+    exit;
+}
+
+
+$lab_config = LabConfig::getById($_REQUEST['lab_config_id']);
+$custom_field_list = $lab_config->getSpecimenCustomFields();
+
+foreach($custom_field_list as $idx => $custom_field) {
+    echo '{ "id": '.$custom_field->id.', "fieldName": "'.$custom_field->fieldName.'" }';
+    if ($idx < count($output_fields) - 1) {
+        echo ",\n";
+    }
+}
+
+echo "\n]";

htdocs/includes/header.php

@@ -113,23 +113,47 @@
     if (isset($top_menu_options)) {
         foreach ($top_menu_options as $key => $value) {
             //echo "hello "."<br/>";
-
-            echo "<li ";
-            echo "><a href='".$value."' ";
-            if (
-                (strpos($_SERVER['PHP_SELF'], $value) !== false)
-                && !(strpos($_SERVER['PHP_SELF'], "_home.php") !== false && $value == "home.php")
-            ) {
-                # Highlight current page tab
-                echo " class='here' ";
-            }
-            if (strpos($key, LangUtil::$pageTerms['MENU_BACKUP']) !== false) {
-                //				echo " target='_blank' ";
+            if($_SESSION['user_level'] == $READONLYMODE){
+                if ($value == 'home.php' || $value == 'reports.php')
+                {
+                    echo "<li ";
+                    echo "><a href='".$value."' ";
+                    if (
+                        (strpos($_SERVER['PHP_SELF'], $value) !== false)
+                        && !(strpos($_SERVER['PHP_SELF'], "_home.php") !== false && $value == "home.php")
+                    ) {
+                        # Highlight current page tab
+                        echo " class='here' ";
+                    }
+                    if (strpos($key, LangUtil::$pageTerms['MENU_BACKUP']) !== false) {
+                        //				echo " target='_blank' ";
+                    }
+                    if (strpos($_SERVER['PHP_SELF'], "_home.php") !== false && strpos($value, "lab_configs.php") !== false) {
+                        echo " class='here' ";
+                    }
+                    echo ">".$key."</a></li>";
+                }
+
             }
-            if (strpos($_SERVER['PHP_SELF'], "_home.php") !== false && strpos($value, "lab_configs.php") !== false) {
-                echo " class='here' ";
+            else{
+                echo "<li ";
+                    echo "><a href='".$value."' ";
+                    if (
+                        (strpos($_SERVER['PHP_SELF'], $value) !== false)
+                        && !(strpos($_SERVER['PHP_SELF'], "_home.php") !== false && $value == "home.php")
+                    ) {
+                        # Highlight current page tab
+                        echo " class='here' ";
+                    }
+                    if (strpos($key, LangUtil::$pageTerms['MENU_BACKUP']) !== false) {
+                        //				echo " target='_blank' ";
+                    }
+                    if (strpos($_SERVER['PHP_SELF'], "_home.php") !== false && strpos($value, "lab_configs.php") !== false) {
+                        echo " class='here' ";
+                    }
+                    echo ">".$key."</a></li>"; 
             }
-            echo ">".$key."</a></li>";
+
         }
     } ?>
     <span id='backup_div' style='float:right;margin-right:15px;'>

htdocs/includes/page_elems.php

@@ -797,6 +797,36 @@ public function getLabUserTypeOptions($selected_value="")
 
 	}
 
+	public function getCustomPatientFieldCheckBoxes()
+	{
+		$lab_config = LabConfig::getById($_SESSION['lab_config_id']);
+		$custom_field_list = $lab_config->getPatientCustomFields();
+
+		if ( $lab_config ) { ?>
+			<?php
+				foreach($custom_field_list as $custom_field) {
+					echo '<input type="checkbox" name="patient_custom_fields[]" id='.$custom_field->id.' value='.$custom_field->id.' checked';
+					echo ">Include ". $custom_field->fieldName."</input><br/>";
+				}
+			?>
+		<?php }
+	}
+
+	public function getCustomSpecimenFieldCheckBoxes()
+	{
+		$lab_config = LabConfig::getById($_SESSION['lab_config_id']);
+		$custom_field_list = $lab_config->getSpecimenCustomFields();
+
+		if ( $lab_config ) { ?>
+			<?php
+				foreach($custom_field_list as $custom_field) {
+					echo '<input type="checkbox" name="specimen_custom_fields[]" id='.$custom_field->id.' value='.$custom_field->id.' checked';
+					echo ">Include ". $custom_field->fieldName."</input><br/>";
+				}
+			?>
+		<?php }
+	}
+
 	public function getSpecimenTypesSelect($lab_config_id)
 	{