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@BrkRaw

brkraw

Preclinical MRI dataset toolkit
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The BrkRaw organization maintains and distributes BrkRaw, which converts raw data from Bruker Biospin preclinical MRI scanners into standardized, neuroimaging-ready datasets. At the same time, we enable extension development and distribution without touching the core codebase through YAML-based rules/specs and Python plugin entrypoints. Our goal is to make metadata parsing, data conversion, and reconstruction extensible so the data can be used seamlessly across downstream workflows.

What we provide

  • Tutorials and quick-start guides
  • Test datasets
  • Specs/rules/mappings for automating standardized data structures (e.g., BIDS)
  • Custom reconstruction examples and plugin showcases
  • A shared space for community contributions

Community

We welcome contributors to share rules, specs, plugins, conversion pipelines, and reconstruction examples built with BrkRaw.

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  1. brkraw brkraw Public

    A modular toolkit for preclinical MRI: from raw studies to reproducible outputs.

    Python 50 30

  2. brkraw-tutorial brkraw-tutorial Public

    Repository of the BrkRaw Python API tutorials with the Jupyter Notebook

    Jupyter Notebook 1

  3. brkraw-mrs brkraw-mrs Public

    BrkRaw converter hook for Bruker raw data to NIfTI-MRS (ported from spec2nii)

    Python

  4. brkraw-viewer brkraw-viewer Public

    Legacy GUI plugin for brkraw 0.5.x. Upgrade in progress.

    Python

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