Add comprehensive library dependency documentation for village repository

LIBRARY_LIST.md

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+# Complete Library List for Village Repository
+
+This document contains every single library used by the BrainCircuitsBehaviorLab/village repository, extracted from all sources including dependencies, imports, documentation, build tools, and system requirements.
+
+## Summary
+- **Total Unique Libraries**: 62
+- **Generated**: December 2024
+- **Repository**: https://github.com/BrainCircuitsBehaviorLab/village
+
+---
+
+## Complete Alphabetical List
+
+1. **black** - Code formatter
+2. **calplot** - Calendar plotting library  
+3. **check-docstring-first** - Pre-commit hook
+4. **check-executables-have-shebangs** - Pre-commit hook
+5. **check-manifest** - Package manifest checker
+6. **check-merge-conflict** - Pre-commit hook
+7. **check-toml** - TOML file validator
+8. **code** - Visual Studio Code (system package)
+9. **codespell** - Spell checker for code
+10. **coverage** - Code coverage measurement
+11. **end-of-file-fixer** - Pre-commit hook
+12. **fire** - Command line interface generation
+13. **i2c-tools** - I2C utilities (system package)
+14. **libcamera** - Camera library
+15. **libportaudio2** - Audio I/O library (system package)
+16. **libqt5multimedia5-plugins** - Qt5 multimedia plugins (system package)
+17. **matplotlib** - Plotting library
+18. **mixed-line-ending** - Pre-commit hook
+19. **mypy** - Static type checker
+20. **myst_parser** - MyST markdown parser for Sphinx
+21. **nbsphinx** - Sphinx extension for Jupyter notebooks
+22. **numpy** - Numerical computing library
+23. **opencv-data** - OpenCV data files (system package)
+24. **opencv-python** - Computer vision library
+25. **pandas** - Data analysis and manipulation library
+26. **picamera2** - Raspberry Pi camera library
+27. **pre-commit** - Pre-commit framework
+28. **pulseaudio** - Audio server (system package)
+29. **PyQt5** - Python bindings for Qt5
+30. **pyserial** - Serial communication library
+31. **pytest** - Testing framework
+32. **pytest-cov** - Coverage plugin for pytest
+33. **python-dateutil** - Date and time utilities
+34. **python-telegram-bot** - Telegram Bot API wrapper
+35. **python3-opencv** - OpenCV Python bindings (system package)
+36. **python3-pyqt5.qtmultimedia** - PyQt5 multimedia module (system package)
+37. **requirements-txt-fixer** - Pre-commit hook
+38. **ruff** - Python linter and formatter
+39. **scipy** - Scientific computing library
+40. **seaborn** - Statistical data visualization
+41. **setuptools** - Package building tools
+42. **setuptools-scm** - Version management from SCM tags
+43. **setuptools_scm** - Version management from SCM tags (underscore variant)
+44. **setuptools_scmtoml** - TOML support for setuptools_scm
+45. **smbus2** - I2C/SMBus library
+46. **sounddevice** - Audio input/output library
+47. **sphinx.ext.autodoc** - Automatic documentation from docstrings
+48. **sphinx.ext.autosectionlabel** - Automatic section labels
+49. **sphinx.ext.autosummary** - Automatic API documentation
+50. **sphinx.ext.githubpages** - GitHub Pages integration
+51. **sphinx.ext.intersphinx** - Cross-project references
+52. **sphinx.ext.napoleon** - NumPy/Google docstring support
+53. **sphinx.ext.viewcode** - Source code viewing
+54. **sphinx_autodoc_typehints** - Sphinx extension for type hints
+55. **sphinx_book_theme** - Sphinx book theme
+56. **sphinx_sitemap** - Sphinx sitemap generator
+57. **sphinxcontrib.video** - Video embedding for Sphinx
+58. **tomli** - TOML parser
+59. **tox** - Testing automation
+60. **trailing-whitespace** - Pre-commit hook
+61. **types-setuptools** - Type stubs for setuptools
+62. **wheel** - Python wheel packaging standard
+
+---
+
+## Libraries by Category
+
+### Core Python Dependencies
+- fire
+- pandas  
+- pyserial
+- python-dateutil
+- python-telegram-bot
+- scipy
+- seaborn
+- setuptools_scm
+- sounddevice
+- sphinx_book_theme
+
+### Development & Testing Tools
+- black
+- coverage
+- mypy
+- pre-commit
+- pytest
+- pytest-cov
+- ruff
+- tox
+
+### Build System & Packaging
+- setuptools
+- setuptools-scm
+- setuptools_scm
+- setuptools_scmtoml
+- wheel
+
+### Computer Vision & Hardware
+- opencv-python
+- numpy
+- picamera2
+- libcamera
+- smbus2
+
+### GUI & Multimedia
+- PyQt5
+- matplotlib
+- sounddevice
+
+### Documentation (Sphinx)
+- myst_parser
+- nbsphinx
+- sphinx.ext.autodoc
+- sphinx.ext.autosectionlabel
+- sphinx.ext.autosummary
+- sphinx.ext.githubpages
+- sphinx.ext.intersphinx
+- sphinx.ext.napoleon
+- sphinx.ext.viewcode
+- sphinx_autodoc_typehints
+- sphinx_book_theme
+- sphinx_sitemap
+- sphinxcontrib.video
+
+### System Dependencies (apt packages)
+- code (Visual Studio Code)
+- i2c-tools
+- libportaudio2
+- libqt5multimedia5-plugins
+- opencv-data
+- pulseaudio
+- python3-opencv
+- python3-pyqt5.qtmultimedia
+
+### Pre-commit Hooks & Code Quality
+- check-docstring-first
+- check-executables-have-shebangs
+- check-manifest
+- check-merge-conflict
+- check-toml
+- codespell
+- end-of-file-fixer
+- mixed-line-ending
+- requirements-txt-fixer
+- trailing-whitespace
+
+### Type Checking & Utilities
+- types-setuptools
+- tomli
+- calplot
+
+---
+
+## Sources Analyzed
+
+1. **pyproject.toml** - Main dependencies, dev dependencies, build requirements
+2. **Python source code** - All import statements across 117+ Python files
+3. **docs/source/conf.py** - Sphinx extensions and mock imports
+4. **docs/source/how_to_build/software_installation.md** - System installation requirements
+5. **.pre-commit-config.yaml** - Pre-commit hooks and their dependencies
+
+---
+
+*This list includes every library, tool, system package, and dependency used directly or indirectly by the Village repository for development, building, testing, documentation, and runtime operations.*

village/plots/corridor_plot.py

@@ -124,7 +124,9 @@ def corridor_plot(
     # get the unique days in the plot
     unique_days = pd.date_range(start=start_first, end=end, freq="D")
     # make them at midnight
-    unique_days = unique_days.map(lambda x: x.replace(hour=0, minute=0, second=0, microsecond=0))
+    unique_days = unique_days.map(
+        lambda x: x.replace(hour=0, minute=0, second=0, microsecond=0)
+    )
     # remove the first
     unique_days = unique_days[unique_days >= start_first]
     # put the ticks there