Add PLINK 1.9 #301
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Add PLINK 1.9 #301
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Pull request overview
This pull request adds PLINK 1.9, a whole-genome association analysis toolset, to BioArchLinux. The package is configured to track releases from the chrchang/plink-ng GitHub repository and builds from source with custom patches.
Key Changes:
- New package configuration for plink1.9 with git-based versioning tracking the plink-ng repository
- PKGBUILD defining build process including preparation, build, and installation steps with custom patching
- Lilac configuration for automated updates from GitHub releases
Reviewed changes
Copilot reviewed 2 out of 2 changed files in this pull request and generated 3 comments.
| File | Description |
|---|---|
| BioArchLinux/plink1.9/lilac.yaml | Configures automated package management with GitHub source tracking for version 1.9 releases and post-build git commit automation |
| BioArchLinux/plink1.9/PKGBUILD | Defines package build process including source retrieval, patching, compilation flags, and installation for plink1.9-git package |
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kbipinkumar
reviewed
Dec 27, 2025
Member
|
I will invite you as co maintainer once this pr is merged, though I am on leave |
Contributor
|
I think it is not version 1.9.x, though it is named plink-1.9. The latest version is v2.0.0-a.6.29, and the PKGBUILD uses plain vcs source with no commit or tag pinned, so it will keep up with the latest commit (version 2.0.0 and later) |
Author
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@sukanka No, that's a quirk of the repo structure. Both 1.9 and 2.0 live under the same source tree; that's why we use This is how it's handled on AUR; please correct me if its not the same here. |
Contributor
Oh. I see, there are 1.9 and 2.0 under the same directory. |
Author
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I believe all comments so far have been resolved. |
Member
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i think the regex syntax is wrong. [plink]
source = "github"
github = "chrchang/plink-ng"
use_max_tag = "true"
include_regex = "^v1.9"
prefix = "v"running |
Contributor
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It should be |
Author
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Understood; the regex has to match the whole version string, not just a part. I missed that while reading the docs.
That matches one of the |
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Involved packages
As previously discussed.
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