In the Readme tutorial:
GenPro_download_ucsc_data.pl -d hg38 -g hg38
for ((i=1;i<27;i++)); do
GenPro_create_db.pl -g hg38 -c $i \
--genedir hg38/gene \
--geneset knownGene \
-f hg38/chr -o hg38/idx;
done;
In GenPro_download_ucsc_data.pl line 101 - 103:
# gene data, per genome sql dump
#my $gene_set = "knownGene";
my $gene_set = "refGene";
This causes GenPro_create_db.pl to fail if run as shown in the readme.