kinship

[pitina244]

Hi all,

I have successfully run the kinship matrix command and got the expected out.kinf file
When using the kinship matrix in single variant association, the analysis runs fine but is not producing any results

epacts single --vcf input.vcf.gz --out SingleSNP_withkinship --ped pedigree.ped --kin out.kinf --pheno mytrait --cov sex --cov age --missing NA --test q.emmax --run 2

any idea?
Thanks

Sandra