From 689882cc97cac0d30bb8c480444e19d7c36cfebf Mon Sep 17 00:00:00 2001
From: meganrm <meganrm@gmail.com>
Date: Wed, 26 Oct 2022 11:47:44 -0700
Subject: [PATCH 1/3] add bloodplasma card

---
 src/constants/networked-trajectories.ts | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/src/constants/networked-trajectories.ts b/src/constants/networked-trajectories.ts
index f3483b894..8f4ef62fd 100644
--- a/src/constants/networked-trajectories.ts
+++ b/src/constants/networked-trajectories.ts
@@ -335,6 +335,30 @@ const TRAJECTORIES: TrajectoryDisplayData[] = [
         imageFile: listeriaUltrapolarImage,
     },
     */
+    {
+        modelName: "Blood Plasma",
+        id: "blood-plasma-1.0.simularium",
+        title: "Blood Plasma",
+        totalSimulatedTime: "0s",
+        authors:
+            "Graham T Johnson, Ludovic Autin, Mostafa Al-Alusi, David S Goodsell, Michel F Sanner & Arthur J Olson",
+        publication: {
+            title:
+                "cellPACK: a virtual mesoscope to model and visualize structural systems biology",
+            journal: "Nature Methods",
+            year: 2015,
+            url: "https://www.nature.com/articles/nmeth.3204",
+        },
+        description:
+            "A cellPACK model of a 100 nm × 100 nm × 15 nm volume of human blood plasma based on a mesoscale recipe containing information for the most abundant macromolecules.",
+        code:
+            "Software used to generate this data is available <a href='https://github.com/mesoscope/cellpack'>here</a>.",
+        legalese: thirdPartyLicensing(
+            "https://github.com/mesoscope/cellpack/blob/main/LICENSE"
+        ),
+        imageFile: "",
+        gifFile: "",
+    },
 ];
 
 export default TRAJECTORIES;

From d52c44d7006afc3af6cf6460c755a045d07d0607 Mon Sep 17 00:00:00 2001
From: meganrm <meganrm@gmail.com>
Date: Tue, 1 Nov 2022 11:12:49 -0700
Subject: [PATCH 2/3] add version

---
 src/constants/networked-trajectories.ts | 1 +
 1 file changed, 1 insertion(+)

diff --git a/src/constants/networked-trajectories.ts b/src/constants/networked-trajectories.ts
index 8f4ef62fd..4088f6076 100644
--- a/src/constants/networked-trajectories.ts
+++ b/src/constants/networked-trajectories.ts
@@ -340,6 +340,7 @@ const TRAJECTORIES: TrajectoryDisplayData[] = [
         id: "blood-plasma-1.0.simularium",
         title: "Blood Plasma",
         totalSimulatedTime: "0s",
+        version: "1.0",
         authors:
             "Graham T Johnson, Ludovic Autin, Mostafa Al-Alusi, David S Goodsell, Michel F Sanner & Arthur J Olson",
         publication: {

From ed1e597112ed98676f49643965f8d181459f7b1b Mon Sep 17 00:00:00 2001
From: meganrm <meganrm@gmail.com>
Date: Tue, 1 Nov 2022 11:21:27 -0700
Subject: [PATCH 3/3] add other two cards

---
 src/constants/networked-trajectories.ts | 34 ++++++++++++++++++++-----
 1 file changed, 27 insertions(+), 7 deletions(-)

diff --git a/src/constants/networked-trajectories.ts b/src/constants/networked-trajectories.ts
index 4088f6076..3ce401a55 100644
--- a/src/constants/networked-trajectories.ts
+++ b/src/constants/networked-trajectories.ts
@@ -193,7 +193,6 @@ const TRAJECTORIES: TrajectoryDisplayData[] = [
         imageFile: medyan2Image,
         gifFile: medyan2Gif,
     },
-    /*
     {
         modelName: "Vivarium E coli",
         id: "vivarium_ecoli.simularium",
@@ -206,15 +205,16 @@ const TRAJECTORIES: TrajectoryDisplayData[] = [
             year: 2020,
             url: "https://www.mdpi.com/1099-4300/22/10/1101",
         },
-        description: "Model of chemotactic E. coli using Vivarium.",
+        description:
+            "A multiscale model of chemotactic E. coli built using Vivarium.",
         code:
             "Software used to generate this data is available <a href='https://github.com/vivarium-collective/vivarium-chemotaxis'>here</a>.",
-        legalese:
-            thirdPartyLicensing("https://github.com/vivarium-collective/vivarium-chemotaxis/blob/master/LICENSE"),
-        imageFile: vivariumImage,
-        gifFile: vivariumGif,
+        legalese: thirdPartyLicensing(
+            "https://github.com/vivarium-collective/vivarium-chemotaxis/blob/master/LICENSE"
+        ),
+        imageFile: "",
+        gifFile: "",
     },
-    */
     {
         modelName: "Condensate Formation",
         id: "springsalad_condensate_formation_Below_Ksp.simularium",
@@ -360,6 +360,26 @@ const TRAJECTORIES: TrajectoryDisplayData[] = [
         imageFile: "",
         gifFile: "",
     },
+    {
+        modelName: "Red Blood Cell Cytoskeleton during Malaria Infection",
+        id: "readdy_malaria.simularium",
+        title: "Red Blood Cell Cytoskeleton during Malaria Infection",
+        totalSimulatedTime: "200 μs",
+        authors: "Julia Jäger et al",
+        publication: {
+            title:
+                "A particle-based computational model to analyse remodelling of the red blood cell cytoskeleton during malaria infections",
+            journal: "PLOS Computational Biology",
+            year: 2022,
+            url:
+                "https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009509",
+        },
+        description: "",
+        code:
+            "Software used to generate this data is available <a href='https://github.com/usschwarz/networks'>here</a>.",
+        imageFile: "",
+        gifFile: "",
+    },
 ];
 
 export default TRAJECTORIES;