diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json
new file mode 100644
index 00000000..2db14e36
--- /dev/null
+++ b/.devcontainer/devcontainer.json
@@ -0,0 +1,80 @@
+{
+  "name": "ph-randomizer",
+  "build": {
+    "dockerfile": "../Dockerfile"
+  },
+  "workspaceMount": "source=${localWorkspaceFolder},target=/home/vscode/ph-randomizer,type=bind",
+  "workspaceFolder": "/home/vscode/ph-randomizer",
+  "features": {
+    // Allows running `docker ...` commands inside the dev container
+    "ghcr.io/devcontainers/features/docker-outside-of-docker:1.6.5": {}
+  },
+  "customizations": {
+    "vscode": {
+      "extensions": [
+        // TOML syntax highlighting
+        "tamasfe.even-better-toml",
+        // mypy support inline in editor
+        "matangover.mypy",
+        // Python extension
+        "ms-python.debugpy",
+        "ms-python.python",
+        "ms-python.vscode-pylance",
+        // Docker extension
+        "ms-azuretools.vscode-docker",
+        // C/C++ extension
+        "ms-vscode.cpptools",
+        // GitHub Actions extension
+        "github.vscode-github-actions",
+        // GitLens extension (inline git blame)
+        "eamodio.gitlens",
+        // ARMIPS extension
+        "ajarmar.armips",
+        // Claude Code extension
+        "anthropic.claude-code"
+      ],
+      "settings": {
+        "python.analysis.autoImportCompletions": true,
+        "python.analysis.typeCheckingMode": "off",
+        "python.defaultInterpreterPath": "/home/vscode/uv-env/bin/python",
+        "python.testing.pytestEnabled": true,
+        "mypy.enabled": true,
+        "mypy.runUsingActiveInterpreter": true
+      }
+    }
+  },
+  "updateContentCommand": [
+    "uv",
+    "sync",
+    "--all-extras",
+    "--all-groups"
+  ],
+  "mounts": [
+    "source=precommit_cache,target=/home/vscode/.cache/pre-commit,type=volume",
+    "source=uv_cache,target=/home/vscode/uv,type=volume",
+    "source=${localEnv:XDG_RUNTIME_DIR}/wayland-0,target=/tmp/wayland-0,type=bind,consistency=cached",
+    // Mount local ssh as readonly (so git can find ssh keys)
+    "source=${localEnv:HOME}${localEnv:USERPROFILE}/.ssh,target=/home/vscode/.ssh,type=bind,readonly"
+  ],
+  "initializeCommand": "bash -c 'mkdir -p /tmp/.X11-unix 2>/dev/null || true; xhost +local: 2>/dev/null || true'",
+  "containerEnv": {
+    "DISPLAY": "${localEnv:DISPLAY}",
+    "WAYLAND_DISPLAY": "${localEnv:WAYLAND_DISPLAY}",
+    "PULSE_SERVER": "${localEnv:PULSE_SERVER}",
+    "LIBGL_ALWAYS_INDIRECT": "0",
+    "XDG_RUNTIME_DIR": "/home/vscode/.vscode-runtime",
+
+    // uv configuration
+    "UV_PROJECT_ENVIRONMENT": "/home/vscode/uv-env",
+    "UV_CACHE_DIR": "/home/vscode/uv/cache",
+    "UV_PYTHON_INSTALL_DIR": "/home/vscode/uv/bin",
+    "UV_LINK_MODE": "symlink",
+
+    // For pytest tests
+    "PY_DESMUME_BATTERY_DIR": "/home/vscode/.config/desmume/"
+  },
+  "runArgs": [
+    "--network=host"
+    // "--device=/dev/dri"  // TODO: need this for Linux, but causes errors on Windows
+  ]
+}
diff --git a/.github/generate_desmume_test_jobs.py b/.github/generate_desmume_test_jobs.py
index b30a148d..23a46907 100644
--- a/.github/generate_desmume_test_jobs.py
+++ b/.github/generate_desmume_test_jobs.py
@@ -30,10 +30,8 @@ def main():
         {x[0] for x in [re.findall(r'.+/(.+)\.py.+', module) for module in my_plugin.collected]}
     )
 
-    workflow_yaml = yaml.safe_load(
-        (Path(__file__).parent / 'workflows' / 'build-test-release.yml').read_text()
-    )
-    matrix = workflow_yaml['jobs']['generate-base-patch']['strategy']['matrix']
+    workflow_yaml = yaml.safe_load((Path(__file__).parent / 'workflows' / 'ci.yml').read_text())
+    matrix = workflow_yaml['jobs']['build-base-patch']['strategy']['matrix']
 
     extended_matrix = {'include': []}
     for include in matrix['include']:
diff --git a/.github/workflows/build-test-release.yml b/.github/workflows/ci.yml
similarity index 73%
rename from .github/workflows/build-test-release.yml
rename to .github/workflows/ci.yml
index eb3f1f07..b10d3ed8 100644
--- a/.github/workflows/build-test-release.yml
+++ b/.github/workflows/ci.yml
@@ -1,4 +1,5 @@
-name: CI
+name: CI/CD
+
 on:
   push:
     branches:
@@ -7,6 +8,11 @@ on:
       - "*"
   pull_request:
   workflow_dispatch:
+
+env:
+  REGISTRY: ghcr.io
+  IMAGE_NAME: ${{ github.repository }}
+
 jobs:
   lint:
     name: Linting/style checks
@@ -14,26 +20,22 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
-      - name: Set up Python
-        uses: actions/setup-python@v5
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
         with:
-          python-version-file: '.python-version'
-          check-latest: true
-
-      - name: Upgrade `pip` and install `wheel`
-        run: python -m pip install --upgrade pip wheel
+          enable-cache: true
 
-      - name: Install pre-commit
-        run: pip install pre-commit
+      - name: Install dependencies
+        run: uv sync --group dev
 
       - name: Cache pre-commit hooks
         uses: actions/cache@v3
         with:
           path: ~/.cache/pre-commit/
-          key: pre-commit-cache|${{ env.pythonLocation }}|${{ hashFiles('.pre-commit-config.yaml') }}|${{ hashFiles('setup.cfg') }}
+          key: pre-commit-cache|${{ hashFiles('uv.lock') }}|${{ hashFiles('.pre-commit-config.yaml') }}|${{ hashFiles('pyproject.toml') }}
 
       - name: Run pre-commit checks
-        run: pre-commit run --all-files --verbose
+        run: uv run pre-commit run --all-files --verbose
 
   type-check:
     name: Type-checking
@@ -41,20 +43,16 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
-      - name: Set up Python
-        uses: actions/setup-python@v5
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
         with:
-          python-version-file: '.python-version'
-          check-latest: true
-
-      - name: Upgrade `pip` and install `wheel`
-        run: python -m pip install --upgrade pip wheel
+          enable-cache: true
 
-      - name: Install tox
-        run: pip install tox
+      - name: Install dependencies
+        run: uv sync --group types --group test
 
       - name: Run type checking
-        run: tox -e type
+        run: uv run tox -e type
 
   # check-logic:
   #   name: Validate logic
@@ -123,21 +121,14 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
-      - name: Set up Python
-        uses: actions/setup-python@v5
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
         with:
-          python-version-file: '.python-version'
-          check-latest: true
-
-      - name: Upgrade `pip` and install `wheel`
-        run: python -m pip install --upgrade pip wheel
-
-      - name: Install dependencies
-        run: pip install -e .
+          enable-cache: true
 
       - name: Check if there are changes to pydantic models that aren't reflected in JSON schema
         run: |
-          python ph_rando/shuffler/aux_models.py
+          uv run python ph_rando/shuffler/aux_models.py
           git diff --exit-code
           if [ $? -ne 0 ]
           then
@@ -146,7 +137,7 @@ jobs:
 
       - name: Run pydantic validation on aux data
         run: |
-          python <<HEREDOC
+          uv run python <<HEREDOC
           import json, sys
           from pathlib import Path
           from pydantic import ValidationError
@@ -170,21 +161,14 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
-      - name: Set up Python
-        uses: actions/setup-python@v5
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
         with:
-          python-version-file: '.python-version'
-          check-latest: true
-
-      - name: Upgrade `pip` and install `wheel`
-        run: python -m pip install --upgrade pip wheel
-
-      - name: Install dependencies
-        run: pip install -e .
+          enable-cache: true
 
       - name: Check if there are changes to pydantic models that aren't reflected in JSON schema
         run: |
-          python ph_rando/settings.py
+          uv run python ph_rando/settings.py
           git diff --exit-code
           if [ $? -ne 0 ]
           then
@@ -193,7 +177,7 @@ jobs:
 
       - name: Run pydantic validation on settings json
         run: |
-          python <<HEREDOC
+          uv run python <<HEREDOC
           import json, sys
           from pathlib import Path
           from pydantic import ValidationError
@@ -220,26 +204,19 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
-      - name: Set up Python
-        uses: actions/setup-python@v5
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
         with:
-          python-version-file: '.python-version'
-          check-latest: true
-
-      - name: Upgrade `pip` and install `wheel`
-        run: python -m pip install --upgrade pip wheel
-
-      - name: Install dependencies
-        run: pip install -e .
+          enable-cache: true
 
       - name: Run the shuffler
-        run: ph_rando_shuffler -o -- --spoiler-log spoiler.txt
+        run: uv run ph_rando_shuffler -o -- --spoiler-log spoiler.txt
 
       - name: Print spoiler log
         run: cat spoiler.txt
 
       - name: Save spoiler log as an artifact
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: spoiler.txt
           path: spoiler.txt
@@ -260,25 +237,55 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
-      - name: Set up Python
-        uses: actions/setup-python@v5
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
         with:
-          python-version-file: '.python-version'
-          check-latest: true
+          enable-cache: true
 
-      - name: Upgrade `pip` and install `wheel`
-        run: python -m pip install --upgrade pip wheel
+      - name: Run tests
+        run: uv run tox -e test
 
-      - name: Install tox
-        run: pip install tox
 
-      - name: Run tests
-        run: tox -e test
+  build-development-image:
+    name: Build development docker image
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      packages: write
+    steps:
+      - uses: actions/checkout@v4
 
+      - name: Login to GitHub Container Registry
+        uses: docker/login-action@v3
+        with:
+          registry: ghcr.io
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
 
-  generate-base-patch:
+      - name: Set up Docker Buildx
+        id: buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Build and push development image
+        uses: docker/build-push-action@v6
+        with:
+          context: .
+          push: true
+          tags: |
+            ghcr.io/${{ github.repository }}:${{
+              github.event_name == 'pull_request'
+                && format('pr{0}', github.event.pull_request.number)
+                || (github.ref_name == 'main'
+                      && github.sha
+                      || github.ref_name)
+            }}
+          cache-from: type=gha
+          cache-to: type=gha,mode=max
+
+  build-base-patch:
     name: Build base patch [${{ matrix.rom_variant }}]
     runs-on: ubuntu-latest
+    needs: build-development-image
     strategy:
       fail-fast: false
       matrix:
@@ -290,19 +297,14 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
-      - name: Set up Python
-        uses: actions/setup-python@v5
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
         with:
-          python-version-file: '.python-version'
-          check-latest: true
-
-      - name: Upgrade `pip` and install `wheel`
-        run: python -m pip install --upgrade pip wheel
+          enable-cache: true
 
       - name: Fetch PH rom
         run: |
-          pip install gdown
-          gdown ${{ secrets[matrix.google_drive_url_secret] }}
+          uvx gdown ${{ secrets[matrix.google_drive_url_secret] }}
         working-directory: base
 
       - name: Get filename of rom
@@ -319,25 +321,31 @@ jobs:
         id: commit-hash
         run: echo "commit_hash=$(git rev-parse --short HEAD)" >> $GITHUB_OUTPUT
 
-      - name: Set up Docker Buildx
-        id: buildx
-        uses: docker/setup-buildx-action@v3
-
       - name: Build base patch
-        uses: docker/build-push-action@v6
-        with:
-          context: base/
-          push: false
-          # cache-from: type=gha
-          # cache-to: type=gha,mode=max
-          build-args: |
-            PH_ROM_PATH=${{ steps.rom-filename.outputs.rom_filename }}
-            VERSION_STRING=${{ steps.commit-hash.outputs.commit_hash }}
-          outputs: |
-            base/out
+        run: |
+          mkdir -p .uv/cache .uv/python .uv/environments
+          docker run --rm \
+            --env PH_ROM_PATH \
+            --env UV_CACHE_DIR=/app/.uv/cache \
+            --env UV_PYTHON_INSTALL_DIR=/app/.uv/python \
+            --env UV_PROJECT_ENVIRONMENT_ROOT=/app/.uv/environments \
+            --env UV_LINK_MODE=copy \
+            --volume "$PWD":/app \
+            --workdir /app \
+            --user $(id -u):$(id -g) \
+            ghcr.io/${{ github.repository }}:${{
+              github.event_name == 'pull_request'
+                && format('pr{0}', github.event.pull_request.number)
+                || (github.ref_name == 'main'
+                      && github.sha
+                      || github.ref_name)
+            }} \
+            make --directory=base/
+        env:
+          PH_ROM_PATH: ${{ steps.rom-filename.outputs.rom_filename }}
 
       - name: Save base patch as an artifact
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: ${{ steps.rom-checksum.outputs.checksum }}.bps
           path: base/out/${{ steps.rom-checksum.outputs.checksum }}.bps
@@ -365,31 +373,28 @@ jobs:
             - 'tests/desmume/**'
             - '.github/workflows/**'
             - '.python-version'
-            - 'setup.cfg'
+            - 'pyproject.toml'
+            - 'uv.lock'
+            - 'tox.ini'
 
-    - name: Set up Python
-      uses: actions/setup-python@v5
+    - name: Install uv
+      uses: astral-sh/setup-uv@v7
       with:
-        python-version-file: '.python-version'
-        check-latest: true
-
-    - name: Upgrade `pip` and install `wheel`
-      run: python -m pip install --upgrade pip wheel
+        enable-cache: true
 
     - name: Install dependencies
-      run: |
-        pip install -e .[test,desmume]
+      run: uv sync --group test --group desmume
 
     - name: Get list of tests to run in separate jobs
       id: set-test-matrix
       run: |
-        python .github/generate_desmume_test_jobs.py
+        uv run python .github/generate_desmume_test_jobs.py
         echo "matrix=$(cat .github/matrix.json)" >> $GITHUB_OUTPUT
 
   test-desmume:
     name: ${{ matrix.emulator }} tests [${{ matrix.module }}] (${{ matrix.rom_variant }})
     needs:
-      - generate-base-patch
+      - build-base-patch
       - generate-base-patch-test-jobs
     # Only run these tests if base patches or the tests themselves are modified, or if a release is happening, or on push to main.
     if: "startsWith(github.ref, 'refs/tags/') || needs.generate-base-patch-test-jobs.outputs.should-run-tests == 'true'"
@@ -407,14 +412,10 @@ jobs:
           # Also retrieve previous commit so we can check if there are relevant changes
           fetch-depth: 2
 
-      - name: Set up Python
-        uses: actions/setup-python@v5
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
         with:
-          python-version-file: '.python-version'
-          check-latest: true
-
-      - name: Upgrade `pip` and install `wheel`
-        run: python -m pip install --upgrade pip wheel
+          enable-cache: true
 
       - name: Install system dependencies
         run: |
@@ -437,9 +438,7 @@ jobs:
           powershell -Command "Start-Process -FilePath vcredist_x64.exe -ArgumentList '/install /q /norestart' -Verb RunAs -Wait"
 
       - name: Fetch PH rom
-        run: |
-          pip install gdown
-          gdown ${{ secrets[matrix.google_drive_url_secret] }}
+        run: uvx gdown ${{ secrets[matrix.google_drive_url_secret] }}
 
       - name: Get filename of rom
         id: rom-filename
@@ -450,7 +449,7 @@ jobs:
         run: echo "checksum=$(sha256sum '${{ steps.rom-filename.outputs.filename }}' | awk '{ print $1 }')" >> $GITHUB_OUTPUT
 
       - name: Download base patch from previous workflow
-        uses: actions/download-artifact@v4
+        uses: actions/download-artifact@v6
         with:
           name: ${{ steps.rom-checksum.outputs.checksum }}.bps
 
@@ -459,11 +458,13 @@ jobs:
           mkdir -p base/out
           mv ${{ steps.rom-checksum.outputs.checksum }}.bps base/out/${{ steps.rom-checksum.outputs.checksum }}.bps
 
-      - name: Install tox
-        run: pip install tox
+      - name: Install Python and write its location to environment
+        run: |
+          uv python install
+          echo "pythonLocation=$(dirname $(uv python list --only-installed --managed-python | awk '{print $2}'))" >> $GITHUB_ENV
 
       - name: Run tests
-        run: PY_DESMUME_BATTERY_DIR="$pythonLocation" tox -e test-${{ matrix.emulator }} -- -k "${{ matrix.module }}"
+        run: PY_DESMUME_BATTERY_DIR="$pythonLocation" uv run tox -e test-${{ matrix.emulator }} -- -k "${{ matrix.module }}"
         env:
           PH_ROM_PATH: ${{ steps.rom-filename.outputs.filename }}
           PY_DESMUME_VIDEO_RECORDING_DIR: recordings/
@@ -471,7 +472,7 @@ jobs:
 
       - name: Save recordings of failed tests as artifacts
         if: failure()
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: test_recordings_${{ matrix.module }}_${{ matrix.rom_variant }}
           path: recordings/
@@ -483,7 +484,7 @@ jobs:
   build:
     name: Build randomizer
     needs:
-      - generate-base-patch
+      - build-base-patch
     strategy:
       fail-fast: false
       matrix:
@@ -495,20 +496,13 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
-      - name: Set up Python
-        uses: actions/setup-python@v5
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
         with:
-          python-version-file: '.python-version'
-          check-latest: true
-
-      - name: Upgrade `pip` and install `wheel`
-        run: python -m pip install --upgrade pip wheel
-
-      - name: Install tox
-        run: pip install tox
+          enable-cache: true
 
       - name: Download base patches
-        uses: actions/download-artifact@v4
+        uses: actions/download-artifact@v6
         with:
           # https://github.com/docker/build-push-action#summaries
           pattern: "!*.dockerbuild"
@@ -519,16 +513,20 @@ jobs:
           mv ./**/*.bps base/out
 
       - name: Build randomizer executable
-        run: tox -e build
+        run: uv run tox -e build
 
       - name: Get current commit hash
         id: commit-hash
         run: echo "hash=$(git rev-parse --short HEAD)" >> $GITHUB_OUTPUT
 
-      - uses: actions/upload-artifact@v4
+      - name: Get executable file name
+        id: executable-filename
+        run: echo "file=$(basename $(ls -1 dist/))" >> $GITHUB_OUTPUT
+
+      - uses: actions/upload-artifact@v5
         with:
           name: ph-randomizer_${{ steps.commit-hash.outputs.hash }}_${{ matrix.os }}
-          path: dist/
+          path: dist/${{ steps.executable-filename.outputs.file }}
 
   run-executable:
     name: Run built randomizer executable [${{ matrix.os }} / ${{ matrix.rom_variant }}]
@@ -551,29 +549,13 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
-      # Note: intentionally use an older version of Python here;
-      # The pyinstaller build should not depend on a specific Python
-      # version being installed (or, Python being installed at all
-      # for that matter).
-      - name: Get two versions of Python behind min required
-        id: python-version
-        run: |
-          PYTHON_VERSION=$(cat .python-version)
-          echo "python-version="3.$(echo "${PYTHON_VERSION:2} 2" | awk '{print $1-$2}')"" >> $GITHUB_OUTPUT
-          rm -rf *
-
-      - name: Set up Python
-        uses: actions/setup-python@v5
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
         with:
-          python-version: ${{ steps.python-version.outputs.python-version }}
-
-      - name: Upgrade `pip` and install `wheel`
-        run: python -m pip install --upgrade pip wheel
+          enable-cache: true
 
       - name: Fetch PH rom
-        run: |
-          pip install gdown
-          gdown ${{ secrets[matrix.google_drive_url_secret] }}
+        run: uvx gdown ${{ secrets[matrix.google_drive_url_secret] }}
 
       - name: Get filename of rom
         id: rom-filename
@@ -584,14 +566,15 @@ jobs:
         run: echo "hash=$(git rev-parse --short HEAD)" >> $GITHUB_OUTPUT
 
       - name: Download built executable from previous job
-        uses: actions/download-artifact@v4
+        uses: actions/download-artifact@v6
         with:
           name: ph-randomizer_${{ steps.commit-hash.outputs.hash }}_${{ matrix.os }}
+          path: bin/
 
       - name: Run executable (no GUI)
         run: |
-          chmod +x ./ph_rando
-          ./ph_rando --no-gui --input-rom-path="${{ steps.rom-filename.outputs.rom_filename }}" --output-rom-path="out.nds"
+          chmod +x bin/ph_rando
+          bin/ph_rando --no-gui --input-rom-path="${{ steps.rom-filename.outputs.rom_filename }}" --output-rom-path="out.nds"
 
       - name: Cleanup
         if: always()
@@ -625,7 +608,7 @@ jobs:
         run: echo "version=$(git describe --tags)" >> $GITHUB_OUTPUT
 
       - name: Download built executables
-        uses: actions/download-artifact@v4
+        uses: actions/download-artifact@v6
         with:
           # https://github.com/docker/build-push-action#summaries
           pattern: "!*.dockerbuild"
diff --git a/.gitignore b/.gitignore
index 40ddaf9c..b1f823e8 100644
--- a/.gitignore
+++ b/.gitignore
@@ -129,6 +129,36 @@ overlay/
 *.bin
 *.nds
 *.zmb
+*.narc
+*.spa
+*.bmg
+*.sgn
+*.srl
+*.NCLR
+*.nsbtx
+*.zeb
+*.ntft
+*.ntfp
+*.nftr
+*.nbfc
+*.nbfp
+*.nsbmd
+*.nsbca
+*.nsbtp
+*.nsbta
+*.nsbma
+*.sdat
+*.clb
+*.nsbmd
+*.ilb
+*.bhio
+
+# Build/script artifacts
+*.bps
+*.o
+base/data/*.png
+base/data/*.bmp
+graphs/*.png
 
 # PyCharm
 .idea/
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 1a44200b..e4de52aa 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -4,7 +4,6 @@ repos:
     hooks:
       - id: check-case-conflict
       - id: check-docstring-first
-      - id: check-json
       - id: check-merge-conflict
       - id: check-toml
       - id: check-yaml
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index fb38d2c9..dc99a3f9 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -1,24 +1,18 @@
 # Contributing to the randomizer
 
-Note, this document is very much a work-in-progress.
+## Local development environment
 
-## Running the randomizer from source
+Before proceeding further in this document, you will need to set up a development environment. All required dependencies and tools will be preinstalled into this containerized environment for you.
 
-Official releases of the randomizer are distributed as single executable files; these are created using [PyInstaller](https://pyinstaller.org). While convenient for end users to run, developers will likely want to run the randomizer from source. To do this:
-
-1. Install the version of [Python](https://www.python.org/downloads/) specified in [`.python-version`](https://github.com/phst-randomizer/ph-randomizer/blob/main/.python-version)
-2. Create a virtualenv using whatever tool you prefer
-3. Run `pip install -e .` from the root of the repository.
-   - It's also recommended to run the following pip install commands if setting up a development environment:
-     - `pip install -e .[test]` - installs dependencies needed to run automated tests
-     - `pip install -e .[types]` - installs dependencies needed to run type-checking, as well as provide IDE auto-complete for IDE's that support mypy
-4. Run `randomizer.py`. Alternatively, to run the shuffler or patcher in isolation, run `ph_rando_shuffler` or `ph_rando_patcher` inside the virtualenv you created above..
+1. Install [Visual Studio Code](https://code.visualstudio.com/)
+1. Follow [VSCode Dev Container setup](https://code.visualstudio.com/docs/devcontainers/containers#_installation), if needed
+1. Clone this git repository and open it in VSCode
+1. From VSCode, press Ctrl-Shift-p and run `Dev Containers: Reopen in Container`
+1. Now inside the container, run `uv run ph_rando` (or `uv run ph_rando --no-gui` for CLI-only mode). Alternatively, to run the shuffler or patcher in isolation, run `uv run ph_rando_shuffler` or `uv run ph_rando_patcher`.
 
 ## Code style/formatting guidelines
 
-All code is linted and, in the case of Python, type-checked in CI on every commit. These checks are handled through [`pre-commit`](https://github.com/pre-commit/pre-commit). First, install `pre-commit` through `pip`:
-
-`pip install pre-commit`
+All code is linted in CI on every commit. These checks are handled through [`pre-commit`](https://github.com/pre-commit/pre-commit).
 
 `pre-commit` can be configured as a `git` hook, which will cause all style/type-checks to be run on commit. This is the recommended mode to use `pre-commit` in, as it will reduce the chance of CI failures due to incorrectly formatted code and/or type-checking failures. To configure this, run `pre-commit install` in the root of the repository.
 
diff --git a/Dockerfile b/Dockerfile
new file mode 100644
index 00000000..ca691441
--- /dev/null
+++ b/Dockerfile
@@ -0,0 +1,67 @@
+# Download and compile ARMIPS
+FROM python:3.12 AS compile_armips
+RUN apt-get update && \
+    apt-get install --no-install-recommends --yes \
+        cmake && \
+    rm -rf /var/lib/apt/lists/*
+RUN git clone --depth 1 --recurse-submodules https://github.com/Kingcom/armips.git
+WORKDIR /armips
+RUN cmake .
+RUN make
+
+# Download and compile Floating IPS patcher
+FROM python:3.12 AS compile_flips
+RUN apt-get update && \
+    apt-get install --no-install-recommends --yes \
+        git \
+        g++ \
+        build-essential \
+        libgtk-3-dev \
+        pkg-config && \
+    rm -rf /var/lib/apt/lists/*
+RUN git clone --depth 1 https://github.com/Alcaro/Flips.git
+RUN chmod +x Flips/make-linux.sh
+RUN cd Flips && ./make-linux.sh
+
+FROM mcr.microsoft.com/devcontainers/base:ubuntu-24.04
+# Don't write .pyc files to disk
+ENV PYTHONDONTWRITEBYTECODE=1
+# Don't buffer output
+ENV PYTHONUNBUFFERED=1
+# Install runtime dependencies needed for development on various parts of the project
+RUN apt-get update && \
+    apt-get install --no-install-recommends --yes \
+        git \
+        gitk \
+        graphviz \
+        graphviz-dev \
+        gcc \
+        gcc-arm-none-eabi \
+        libx11-6 \
+        libsdl2-2.0-0 \
+        libsdl2-dev \
+        libgtk2.0-0 \
+        libgtk2.0-dev \
+        libgtk-3-dev \
+        libpcap0.8 \
+        libpcap-dev \
+        libosmesa6 \
+        libglu1-mesa \
+        x11-apps \
+        libxcb-cursor0 \
+        pulseaudio && \
+    rm -rf /var/lib/apt/lists/*
+# Install uv
+COPY --from=ghcr.io/astral-sh/uv:latest /uv /uvx /bin/
+# Set up user directories for vscode
+USER vscode
+RUN mkdir -p /home/vscode/.vscode-runtime
+RUN mkdir -p /home/vscode/uv
+WORKDIR /home/vscode/ph-randomizer
+# Set up pre-commit cache directory so that it can be reused as a docker volume
+RUN mkdir -p /home/vscode/.cache/pre-commit
+RUN chown -R vscode /home/vscode/.cache/pre-commit
+
+# Copy compiled armips and flips binaries from previous stages
+COPY --from=compile_armips /armips/armips /bin/
+COPY --from=compile_flips /Flips/flips /bin/
diff --git a/base/Dockerfile b/base/Dockerfile
deleted file mode 100644
index b3d197af..00000000
--- a/base/Dockerfile
+++ /dev/null
@@ -1,48 +0,0 @@
-# Download and compile ARMIPS
-FROM python:3.12 AS compile_armips
-RUN apt-get update && apt-get install -y cmake
-RUN git clone --depth 1 --recurse-submodules https://github.com/Kingcom/armips.git
-WORKDIR /armips
-RUN cmake .
-RUN make
-
-# Download and compile Floating IPS patcher
-FROM python:3.12 AS compile_flips
-RUN apt-get update && apt-get install -y git g++ build-essential libgtk-3-dev pkg-config
-RUN git clone --depth 1 https://github.com/Alcaro/Flips.git
-RUN chmod +x Flips/make-linux.sh
-RUN cd Flips && ./make-linux.sh
-
-# Build base patch
-FROM python:3.12 AS build
-WORKDIR /app
-# Install system dependencies
-RUN apt-get update && apt-get install -y \
-    gcc \
-    gcc-arm-none-eabi
-# Needed for `flips` patcher
-RUN apt-get install -y libgtk-3-dev
-# Install python dependencies
-ADD requirements.txt /app/
-RUN pip install --upgrade pip
-RUN pip install -r requirements.txt
-# Add needed source files to the docker build
-ADD data/* /app/
-ADD code/* /app/code/
-ADD extract_rom.py /app
-ADD rebuild_rom.py /app
-ADD Makefile /app
-# Copy compiled armips, and flips binaries from previous stages
-COPY --from=compile_armips /armips/armips /app
-COPY --from=compile_flips /Flips/flips /app
-# Create base patch
-ARG PH_ROM_PATH
-ARG VERSION_STRING
-ADD $PH_ROM_PATH /app
-RUN make
-# Name base patch using its source ROM's SHA-256 so that we can tell what ROM it's for.
-RUN export sha256=$(sha256sum $PH_ROM_PATH | awk '{ print $1 }'); mv patch.bps $sha256.bps
-
-# Export base patch to host
-FROM scratch
-COPY --from=build /app/*.bps /
diff --git a/base/Makefile b/base/Makefile
index f679c60d..afa3bc6d 100644
--- a/base/Makefile
+++ b/base/Makefile
@@ -14,23 +14,33 @@ ASM=$(SRC:.c=.asm)
 
 INPUT_NDS_FILE=$(PH_ROM_PATH)
 PREPATCHED_NDS_FILE=prepatched.nds
-OUTPUT_NDS_FILE=out.nds
-OUTPUT_BPS_FILE=patch.bps
+OUTPUT_DIR=out
+OUTPUT_NDS_FILE=$(OUTPUT_DIR)/out.nds
+OUTPUT_BPS_FILE=$(OUTPUT_DIR)/$(shell sha256sum $(INPUT_NDS_FILE) | cut -d ' ' -f 1).bps
 
 # Set version string to a default if it isn't provided
 VERSION_STRING := $(or $(VERSION_STRING), "no_version")
 
 $(OUTPUT_BPS_FILE): $(INPUT_NDS_FILE) $(OUTPUT_NDS_FILE)
-	./flips --create $^ $@
+	mkdir -p out
+	flips --create $^ $@
 
-$(OUTPUT_NDS_FILE): $(PREPATCHED_NDS_FILE) $(OBJ)
-	python3 extract_rom.py $(PREPATCHED_NDS_FILE) .
-	./armips code/main.asm
+$(OUTPUT_NDS_FILE): $(PREPATCHED_NDS_FILE) $(OBJ) $(OUTPUT_DIR)
+	uv sync --group=base_patch
 
-	python3 rebuild_rom.py $(PREPATCHED_NDS_FILE) overlay/ arm9_header.bin arm9_compressed.bin $(OUTPUT_NDS_FILE)
+	mkdir -p NDS_UNPACK/
+	uv run extract_rom.py $(PREPATCHED_NDS_FILE) NDS_UNPACK/
+
+	cd NDS_UNPACK/ && armips ../code/main.asm
+
+	uv run rebuild_rom.py $(PREPATCHED_NDS_FILE) NDS_UNPACK/overlay/ NDS_UNPACK/arm9_header.bin NDS_UNPACK/arm9_compressed.bin $(OUTPUT_NDS_FILE)
 
 $(PREPATCHED_NDS_FILE): $(INPUT_NDS_FILE)
-	VERSION_STRING=$(VERSION_STRING) python3 data_patcher.py --input-rom $(INPUT_NDS_FILE) --output-rom $(PREPATCHED_NDS_FILE)
+	uv sync --group=base_patch
+	VERSION_STRING=$(VERSION_STRING) uv run data/data_patcher.py --input-rom $(INPUT_NDS_FILE) --output-rom $(PREPATCHED_NDS_FILE)
+
+$(OUTPUT_DIR):
+	mkdir -p $(OUTPUT_DIR)
 
 # Same as `all`, but also includes readable .asm file
 debug: $(OBJ) $(ASM)
diff --git a/base/code/main.asm b/base/code/main.asm
index 1271240c..a855750e 100644
--- a/base/code/main.asm
+++ b/base/code/main.asm
@@ -1,17 +1,16 @@
 .nds
-.relativeinclude on
 .erroronwarning on
 
-.include "ph.asm"
+.include "../code/ph.asm"
 
-.open "../arm9_original.bin","../arm9_compressed.bin",0x02004000
+.open "arm9_original.bin","arm9_compressed.bin",0x02004000
     .arm
     .org 0x54180 + 0x2004000
         ; Area of unused space in arm9.bin; new code can be stored here
         .area 0x301, 0xFF
             .fill 0xA, 0x0 ; bitmap for randomizer settings
 
-            .include "_island_shop_files.asm"
+            .include "../code/_island_shop_files.asm"
         .pool
         .endarea
 
@@ -31,7 +30,7 @@
                 pop pc
 
             @check_additional_items_tree_drop:
-                .include "_additional_tree_items.asm"
+                .include "../code/_additional_tree_items.asm"
                 ldr r0, [r4, 0x6c]
                 b 0x2162790
 
@@ -95,7 +94,7 @@
 .close
 
 
-.open "../overlay/overlay_0000.bin", 0x02077360
+.open "overlay/overlay_0000.bin", 0x02077360
     .arm
     .org 0x20300 + 0x02077360
         .area 0x4
@@ -137,7 +136,7 @@
         .endarea
 .close
 
-.open "../overlay/overlay_0003.bin", 0x20eece0
+.open "overlay/overlay_0003.bin", 0x20eece0
     .thumb
     ; Patch softlock when buying a sea chart or treasure map in a shop.
     ; Replace UI animation id 0x29 with id 0x6 (id when closing map)
@@ -222,7 +221,7 @@
         .endarea
 .close
 
-.open "../overlay/overlay_0009.bin", 0x02112ba0
+.open "overlay/overlay_0009.bin", 0x02112ba0
     .thumb
     .org 0x211c09a
         ; This overrides the routine that is in charge of spawning the correct 3D model
@@ -243,11 +242,11 @@
 .close
 
 
-.open "../overlay/overlay_0014.bin", 0x0211F5C0
+.open "overlay/overlay_0014.bin", 0x0211F5C0
     .arm
     .org 0x213b0e8
         .area 0x74, 0xFF
-            .importobj "code/extend_RUPY_npc.o"
+            .importobj "../code/extend_RUPY_npc.o"
         .endarea
 
     .org 0x213a108
@@ -357,7 +356,7 @@
 .close
 
 
-.open "../overlay/overlay_0015.bin", 0x0211F5C0
+.open "overlay/overlay_0015.bin", 0x0211F5C0
     .arm
     .org 0x17420 + 0x0211F5C0 ;0x217bce0
         .area 0x4
@@ -371,7 +370,7 @@
 .close
 
 
-.open "../overlay/overlay_0018.bin", 0x0215b400
+.open "overlay/overlay_0018.bin", 0x0215b400
     .arm
     .org 0x216278c
         .area 0x4, 0xff
@@ -379,7 +378,7 @@
         .endarea
 .close
 
-.open "../overlay/overlay_0031.bin", 0x0217bce0
+.open "overlay/overlay_0031.bin", 0x0217bce0
     .arm
 
     ; Make the "random treasure" in shops a fixed item (i.e. "unrandomize" it)
@@ -466,18 +465,18 @@
 ; Note: this is an extra overlay added by the randomizer.
 ; It is not present in the original rom, and must be added prior
 ; to executing this ARMIPS patch.
-.open "../overlay/overlay_0062.bin", 0x23C0900
+.open "overlay/overlay_0062.bin", 0x23C0900
     .org 0x23C0900
         .area 32512, 0xEE
             .arm
-            .importobj "code/faster_boat.o"
-            .importobj "code/fixed_random_treasure_in_shop.o"
-            .importobj "code/progressive_sword_check.o"
-            .importobj "code/rando_settings.o"
-            .importobj "code/get_item_model.o"
-            .importobj "code/set_initial_flags.o"
-            .importobj "code/spawn_custom_freestanding_item.o"
-            .importobj "code/custom_salvage_item.o"
-            .importobj "code/extend_give_item_function.o"
+            .importobj "../code/faster_boat.o"
+            .importobj "../code/fixed_random_treasure_in_shop.o"
+            .importobj "../code/progressive_sword_check.o"
+            .importobj "../code/rando_settings.o"
+            .importobj "../code/get_item_model.o"
+            .importobj "../code/set_initial_flags.o"
+            .importobj "../code/spawn_custom_freestanding_item.o"
+            .importobj "../code/custom_salvage_item.o"
+            .importobj "../code/extend_give_item_function.o"
         .endarea
 .close
diff --git a/ph_rando/ui/cli.py b/ph_rando/ui/cli.py
index 77849852..860d0213 100644
--- a/ph_rando/ui/cli.py
+++ b/ph_rando/ui/cli.py
@@ -4,14 +4,18 @@
 
 import click
 
+from ph_rando import __version__
 from ph_rando.common import click_setting_options
 from ph_rando.patcher._patcher import Patcher
 from ph_rando.shuffler._shuffler import Shuffler
 from ph_rando.shuffler._spoiler_log import generate_spoiler_log
 from ph_rando.shuffler._util import generate_random_seed
 
+logger = logging.getLogger(__name__)
+
 
 @click.command()
+@click.version_option(version=__version__)
 @click.option(
     '-i',
     '--input-rom-path',
diff --git a/pyproject.toml b/pyproject.toml
index 8b36e474..f488f7bc 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -4,41 +4,49 @@ dynamic = ["version"]
 requires-python = ">=3.12"
 
 dependencies = [
-    "PySide6==6.8.1",
-    "click==8.1.8",
-    "inflection==0.5.1",
+    "PySide6",
+    "click",
+    "inflection",
     "ndspy@git+https://github.com/mike8699/ndspy.git@9d80480e8a3d65a389aac6f5d10978bd9113c977",
-    "ordered-set==4.1.0",
-    "pydantic==2.10.4",
-    "pyparsing==3.2.0",
-    "vidua==0.4.5",
+    "ordered-set",
+    "pydantic",
+    "pyparsing",
+    "vidua",
     "zed@git+https://github.com/phst-randomizer/zed.git@e59a9653ea1344cbc147bab446821813200b9d19",
 ]
 
-[project.optional-dependencies]
+[dependency-groups]
+dev = [
+    "pre-commit",
+    "tox",
+    "tox-uv",
+]
 test = [
-    "PyYAML==6.0.2",
-    "numpy~=1.26.1",
-    "opencv-python~=4.7.0.68",
-    "pytesseract~=0.3.13",
-    "pytest~=8.3.4",
-    "pytest-repeat~=0.9.3",
-    "pytest-rerunfailures~=15.0",
-    "pytest-xdist~=3.6.1",
-    "tqdm~=4.67.1",
+    "PyYAML",
+    "numpy",
+    "opencv-python",
+    "pytesseract",
+    "pytest",
+    "pytest-repeat",
+    "pytest-rerunfailures",
+    "pytest-xdist",
+    "tqdm",
 ]
 desmume = [
-    "py-desmume==0.0.7",
+    "py-desmume",
     "birds-eye-lib@git+https://github.com/SkiHatDuckie/birds-eye.git@662d148c80830e8399e7025ba92fa44da01afa1c",
 ]
+base_patch = [
+    "Pillow",
+]
 types = [
-    "mypy==1.14.0",
-    "types-Pillow~=10.2.0.20240822",
-    "types-PyYAML~=6.0.12.20241221",
-    "types-setuptools~=75.6.0.20241223",
-    "types-tqdm~=4.67.0.20241221",
+    "mypy",
+    "types-Pillow",
+    "types-PyYAML",
+    "types-setuptools",
+    "types-tqdm",
 ]
-pyinstaller = ["pyinstaller==6.11.1"]
+pyinstaller = ["pyinstaller"]
 
 [project.scripts]
 ph_rando = "ph_rando.ui.main:main"
@@ -46,13 +54,17 @@ ph_rando_shuffler = "ph_rando.shuffler.main:shuffler_cli"
 ph_rando_patcher = "ph_rando.patcher.main:patcher_cli"
 
 [build-system]
-requires = ["setuptools>68", "setuptools_scm"]
-build-backend = "setuptools.build_meta"
+requires = ["hatchling", "hatch-vcs"]
+build-backend = "hatchling.build"
 
-[tool.setuptools]
-packages = ["ph_rando"]
+[tool.hatch.version]
+source = "vcs"
 
-[tool.setuptools_scm]
+[tool.hatch.metadata]
+allow-direct-references = true
+
+[tool.hatch.build]
+packages = ["ph_rando"]
 
 [tool.black]
 exclude = '\.eggs|\.git|\.mypy_cache|\.tox|\.venv|_build|buck-out|dist'
diff --git a/tox.ini b/tox.ini
index e1a26890..0a7c8118 100644
--- a/tox.ini
+++ b/tox.ini
@@ -5,17 +5,18 @@ envlist =
     test-desmume,
 isolated_build = True
 
+[testenv]
+runner = uv-venv-lock-runner
+
 [testenv:type]
-deps =
-    mypy
-extras =
+dependency_groups =
     test
     types
 commands =
     mypy {posargs:.}
 
 [testenv:test]
-extras =
+dependency_groups =
     test
 commands =
     pytest --numprocesses auto {posargs} --ignore=tests/desmume
@@ -26,7 +27,7 @@ passenv =
     PY_DESMUME_BATTERY_DIR
     PY_DESMUME_VIDEO_RECORDING_DIR
     EMUHAWK_PATH
-extras =
+dependency_groups =
     test
     desmume
 commands =
@@ -38,14 +39,14 @@ passenv =
     PY_DESMUME_BATTERY_DIR
     PY_DESMUME_VIDEO_RECORDING_DIR
     EMUHAWK_PATH
-extras =
+dependency_groups =
     test
     desmume
 commands =
     pytest --melonds --numprocesses auto {posargs} tests/desmume
 
 [testenv:build]
-extras =
+dependency_groups =
     pyinstaller
 commands =
     pyinstaller ph_rando.spec
diff --git a/uv.lock b/uv.lock
new file mode 100644
index 00000000..c1e284a6
--- /dev/null
+++ b/uv.lock
@@ -0,0 +1,924 @@
+version = 1
+revision = 3
+requires-python = ">=3.12"
+resolution-markers = [
+    "sys_platform == 'darwin'",
+    "platform_machine == 'aarch64' and sys_platform == 'linux'",
+    "(platform_machine != 'aarch64' and sys_platform == 'linux') or (sys_platform != 'darwin' and sys_platform != 'linux')",
+]
+
+[[package]]
+name = "altgraph"
+version = "0.17.4"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/de/a8/7145824cf0b9e3c28046520480f207df47e927df83aa9555fb47f8505922/altgraph-0.17.4.tar.gz", hash = "sha256:1b5afbb98f6c4dcadb2e2ae6ab9fa994bbb8c1d75f4fa96d340f9437ae454406", size = 48418, upload-time = "2023-09-25T09:04:52.164Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/4d/3f/3bc3f1d83f6e4a7fcb834d3720544ca597590425be5ba9db032b2bf322a2/altgraph-0.17.4-py2.py3-none-any.whl", hash = "sha256:642743b4750de17e655e6711601b077bc6598dbfa3ba5fa2b2a35ce12b508dff", size = 21212, upload-time = "2023-09-25T09:04:50.691Z" },
+]
+
+[[package]]
+name = "annotated-types"
+version = "0.7.0"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/ee/67/531ea369ba64dcff5ec9c3402f9f51bf748cec26dde048a2f973a4eea7f5/annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89", size = 16081, upload-time = "2024-05-20T21:33:25.928Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/78/b6/6307fbef88d9b5ee7421e68d78a9f162e0da4900bc5f5793f6d3d0e34fb8/annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53", size = 13643, upload-time = "2024-05-20T21:33:24.1Z" },
+]
+
+[[package]]
+name = "birds-eye-lib"
+version = "1.1.0"
+source = { git = "https://github.com/SkiHatDuckie/birds-eye.git?rev=662d148c80830e8399e7025ba92fa44da01afa1c#662d148c80830e8399e7025ba92fa44da01afa1c" }
+
+[[package]]
+name = "cachetools"
+version = "6.2.1"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/cc/7e/b975b5814bd36faf009faebe22c1072a1fa1168db34d285ef0ba071ad78c/cachetools-6.2.1.tar.gz", hash = "sha256:3f391e4bd8f8bf0931169baf7456cc822705f4e2a31f840d218f445b9a854201", size = 31325, upload-time = "2025-10-12T14:55:30.139Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/96/c5/1e741d26306c42e2bf6ab740b2202872727e0f606033c9dd713f8b93f5a8/cachetools-6.2.1-py3-none-any.whl", hash = "sha256:09868944b6dde876dfd44e1d47e18484541eaf12f26f29b7af91b26cc892d701", size = 11280, upload-time = "2025-10-12T14:55:28.382Z" },
+]
+
+[[package]]
+name = "cfgv"
+version = "3.4.0"
+source = { registry = "https://pypi.org/simple" }
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