diff --git a/.Rbuildignore b/.Rbuildignore index 6faf1ab..fd0a0a4 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -11,3 +11,5 @@ ^codecov\.yml$ ^\.github$ ^cran-comments\.md$ +^revdep$ +^CRAN-SUBMISSION$ diff --git a/CRAN-SUBMISSION b/CRAN-SUBMISSION new file mode 100644 index 0000000..db9bccc --- /dev/null +++ b/CRAN-SUBMISSION @@ -0,0 +1,3 @@ +Version: 0.3.0 +Date: 2025-10-09 19:14:17 UTC +SHA: 844b827509e60be93d5c3886a4b71056477318ec diff --git a/DESCRIPTION b/DESCRIPTION index f1f07d7..9ad623d 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -5,8 +5,8 @@ Authors@R: c( person("Nicholas", "Masel", email = "nmasel@its.jnj.com", role = c("aut", "cre")), person("Mike", "Stackhouse", email = "mike.stackhouse@atorusresearch.com", role = c("aut"), comment = c(ORCID = "0000-0001-6030-723X")), person("Aidan", "Ceney", email = "aidan.ceney@atorusresearch.com", role = "aut"), - person("Janssen R&D", role = c("cph", "fnd")), - person("Atorus Research LLC", role = "cph") + person("Johnson & Johnson Innovative Medicine", role = c("cph", "fnd")), + person("Atorus Research, Inc.", role = "cph") ) Description: The purpose of this package is to support the setup the R environment. The two main features are 'autos', to automatically source files and/or diff --git a/LICENSE.md b/LICENSE.md index b62a9b5..d39afc1 100644 --- a/LICENSE.md +++ b/LICENSE.md @@ -179,7 +179,7 @@ recommend that a file or class name and description of purpose be included on the same “printed page” as the copyright notice for easier identification within third-party archives. - Copyright [yyyy] [name of copyright owner] + Copyright 2025 Johnson & Johnson Innovative Medicine and Atorus Research, Inc. Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. diff --git a/R/paths.R b/R/paths.R index 3a5bc1e..17647a6 100644 --- a/R/paths.R +++ b/R/paths.R @@ -5,7 +5,7 @@ #' an isolated namespace for storing path objects that can be retrieved using #' the package's path management functions. #' -#' @format An environment object created with \code{new.env()}. +#' @returns An environment object created with \code{new.env()}. #' #' @details #' This environment serves as the default storage location for path objects diff --git a/README.Rmd b/README.Rmd index cc9db02..b4b4755 100644 --- a/README.Rmd +++ b/README.Rmd @@ -93,6 +93,10 @@ print(output) # Points to your output directory ## Installation +```{r eval = FALSE} +install.packages("envsetup") +``` + ### Development version ```{r eval = FALSE} diff --git a/README.md b/README.md index c2210d9..b109a17 100644 --- a/README.md +++ b/README.md @@ -95,6 +95,10 @@ print(output) # Points to your output directory ## Installation +``` r +install.packages("envsetup") +``` + ### Development version ``` r diff --git a/man/envsetup_environment.Rd b/man/envsetup_environment.Rd index ee44c53..2cc22a5 100644 --- a/man/envsetup_environment.Rd +++ b/man/envsetup_environment.Rd @@ -5,11 +5,14 @@ \alias{envsetup_environment} \title{Environment Setup Environment} \format{ -An environment object created with \code{new.env()}. +An object of class \code{environment} of length 0. } \usage{ envsetup_environment } +\value{ +An environment object created with \code{new.env()}. +} \description{ A dedicated environment object used to store and manage path configurations and other setup variables for the envsetup package. This environment provides diff --git a/revdep/.gitignore b/revdep/.gitignore new file mode 100644 index 0000000..111ab32 --- /dev/null +++ b/revdep/.gitignore @@ -0,0 +1,7 @@ +checks +library +checks.noindex +library.noindex +cloud.noindex +data.sqlite +*.html diff --git a/revdep/README.md b/revdep/README.md new file mode 100644 index 0000000..8615edc --- /dev/null +++ b/revdep/README.md @@ -0,0 +1,55 @@ +# Platform + +|field |value | +|:--------|:--------------------------------------------------------------------------| +|version |R version 4.4.1 (2024-06-14) | +|os |Red Hat Enterprise Linux 8.10 (Ootpa) | +|system |x86_64, linux-gnu | +|ui |RStudio | +|language |(EN) | +|collate |en_US.UTF-8 | +|ctype |en_US.UTF-8 | +|tz |America/New_York | +|date |2025-10-09 | +|rstudio |2024.09.0+375.pro3 Cranberry Hibiscus (server) | +|pandoc |3.2 @ /usr/lib/rstudio-server/bin/quarto/bin/tools/x86_64/ (via rmarkdown) | +|quarto |1.5.57 @ /usr/local/bin/quarto | + +# Dependencies + +|package |old |new |Δ | +|:-----------|:----------------------|:------|:--| +|envsetup |0.3.0.0.0.0.1753978943 |0.3.0 |* | +|askpass |NA |1.2.1 |* | +|cli |NA |3.6.5 |* | +|crayon |NA |1.5.3 |* | +|credentials |NA |2.0.3 |* | +|curl |NA |7.0.0 |* | +|envnames |0.4.1 |0.4.1 | | +|fs |NA |1.6.6 |* | +|gert |NA |2.1.5 |* | +|gh |NA |1.5.0 |* | +|glue |NA |1.8.0 |* | +|httr2 |NA |1.2.1 |* | +|jsonlite |NA |2.0.0 |* | +|magrittr |NA |2.0.4 |* | +|openssl |NA |2.3.4 |* | +|purrr |NA |1.1.0 |* | +|R6 |NA |2.6.1 |* | +|rlang |NA |1.1.6 |* | +|rprojroot |NA |2.1.1 |* | +|rstudioapi |NA |0.17.1 |* | +|sys |NA |3.4.3 |* | +|usethis |NA |3.2.1 |* | +|withr |NA |3.0.2 |* | +|yaml |NA |2.3.10 |* | +|zip |NA |2.3.3 |* | + +# Revdeps + +## Failed to check (1) + +|package |version |error |warning |note | +|:--------------|:-------|:-----|:-------|:----| +|quasar.gallery |? | | | | + diff --git a/revdep/cran.md b/revdep/cran.md new file mode 100644 index 0000000..cb582d7 --- /dev/null +++ b/revdep/cran.md @@ -0,0 +1,7 @@ +## revdepcheck results + +We checked 3 reverse dependencies (0 from CRAN + 3 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. + + * We saw 0 new problems + * We failed to check 0 packages + diff --git a/revdep/failures.md b/revdep/failures.md new file mode 100644 index 0000000..a623b78 --- /dev/null +++ b/revdep/failures.md @@ -0,0 +1,29 @@ +# quasar.gallery () + +* GitHub: +* Email: + +Run `revdepcheck::revdep_details(, "quasar.gallery")` for more info + +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` diff --git a/revdep/problems.md b/revdep/problems.md new file mode 100644 index 0000000..9a20736 --- /dev/null +++ b/revdep/problems.md @@ -0,0 +1 @@ +*Wow, no problems at all. :)* \ No newline at end of file