find ortholog internal issue

[badoi]

I'm getting this issue running the post-processing file a couple minutes into running.

`
(base) [bnphan@compute-1-13 20190924_mm10ToHg38_halLiftover]$ MOUSEBGGZ='/projects/pfenninggroup/machineLearningForComputationalBiology/gwasEnrichments/background/mouseDHS/mm10_univ_dhs_ucsc.bed.gz'
(base) [bnphan@compute-1-13 20190924_mm10ToHg38_halLiftover]$ MOUSEBG='/projects/pfenninggroup/machineLearningForComputationalBiology/gwasEnrichments/background/mouseDHS/mm10_univ_dhs_ucsc.bed'
(base) [bnphan@compute-1-13 20190924_mm10ToHg38_halLiftover]$ MOUSEBGGZ='/projects/pfenninggroup/machineLearningForComputationalBiology/gwasEnrichments/background/mouseDHS/mm10_univ_dhs_ucsc.bed.gz'
(base) [bnphan@compute-1-13 20190924_mm10ToHg38_halLiftover]$ MOUSEBG='/projects/pfenninggroup/machineLearningForComputationalBiology/gwasEnrichments/background/mouseDHS/mm10_univ_dhs_ucsc.bed'
(base) [bnphan@compute-1-13 20190924_mm10ToHg38_halLiftover]$ HALLIFTEDTILE='/home/bnphan/projects/20190924_mm10ToHg38_halLiftover/bed/mm10_univ_dhs_ucsc_halLifted2hg38.bed'
(base) [bnphan@compute-1-13 20190924_mm10ToHg38_halLiftover]$ MAXSCOREFILE='/home/bnphan/projects/20190924_mm10ToHg38_halLiftover/bed/mm10_univ_dhs_ucsc_maxScorePosition.bed'
(base) [bnphan@compute-1-13 20190924_mm10ToHg38_halLiftover]$ HALLIFTEDSFILE='/home/bnphan/projects/20190924_mm10ToHg38_halLiftover/bed/mm10_univ_dhs_ucsc_maxscorePosition_halLifted2hg38.bed'
(base) [bnphan@compute-1-13 20190924_mm10ToHg38_halLiftover]$ OUTFILE='/home/bnphan/projects/20190924_mm10ToHg38_halLiftover/bed/mm10_univ_dhs_ucsc_halLifted2hg38_orthologs.bed'
(base) [bnphan@compute-1-13 20190924_mm10ToHg38_halLiftover]$ python /home/bnphan/src/halLiftover-postprocessing/orthologFind.py \

-max_len 1000 -min_len 50 -protect_dist 5
-qFile $MOUSEBG
-tFile $HALLIFTEDTILE
-sFile $HALLIFTEDSFILE
-oFile $OUTFILE
Traceback (most recent call last):
File "/home/bnphan/src/halLiftover-postprocessing/orthologFind.py", line 427, in
main(sys.argv[1:])
File "/home/bnphan/src/halLiftover-postprocessing/orthologFind.py", line 421, in main
ortholog_find(file_H,max_len,alen,min_len,blen,int(args.protect_dist));
File "/home/bnphan/src/halLiftover-postprocessing/orthologFind.py", line 353, in ortholog_find
make_hist(file_H[3],file_H[3],2500)
File "/home/bnphan/src/halLiftover-postprocessing/orthologFind.py", line 238, in make_hist
plt.figure(1)
File "/home/bnphan/miniconda3/lib/python3.7/site-packages/matplotlib/pyplot.py", line 545, in figure
**kwargs)
File "/home/bnphan/miniconda3/lib/python3.7/site-packages/matplotlib/backend_bases.py", line 3252, in new_figure_manager
return cls.new_figure_manager_given_figure(num, fig)
File "/home/bnphan/miniconda3/lib/python3.7/site-packages/matplotlib/backends/_backend_tk.py", line 950, in new_figure_manager_given_figure
window = tk.Tk(className="matplotlib")
File "/home/bnphan/miniconda3/lib/python3.7/tkinter/init.py", line 2023, in init
self.tk = _tkinter.create(screenName, baseName, className, interactive, wantobjects, useTk, sync, use)
_tkinter.TclError: couldn't connect to display "localhost:10.0"
`

[imk1]

Did you ssh in with --x11? If not, try that and see if that solves the problem.