diff --git a/src/alphafold/data/mmcif_parsing.py b/src/alphafold/data/mmcif_parsing.py index 1837516..baa52b2 100755 --- a/src/alphafold/data/mmcif_parsing.py +++ b/src/alphafold/data/mmcif_parsing.py @@ -20,7 +20,7 @@ from absl import logging from Bio import PDB -from Bio.Data import SCOPData +from Bio.Data import PDBData # Type aliases: ChainId = str @@ -256,7 +256,7 @@ def parse(*, author_chain = mmcif_to_author_chain_id[chain_id] seq = [] for monomer in seq_info: - code = SCOPData.protein_letters_3to1.get(monomer.id, 'X') + code = PDBData.protein_letters_3to1.get(monomer.id, 'X') seq.append(code if len(code) == 1 else 'X') seq = ''.join(seq) author_chain_to_sequence[author_chain] = seq