diff --git a/DESCRIPTION b/DESCRIPTION index 712eea0..791ced3 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -15,17 +15,30 @@ BugReports: https://github.com/omicsEye/omePath/issues Depends: R (>= 2.10) Imports: + backports, + car, + chemometrics, + cplm, data.table, downloader, dplyr, future, ggplot2, gsEasy, + hash, + igraph, + limma, logging, magrittr, + nlme, + pbapply, pheatmap, + pscl, readr, - sfsmisc + sfsmisc, + vegan +Remotes: + bioc::limma Suggests: knitr, testthat (>= 2.1.0) diff --git a/README.md b/README.md index 2d27d0e..604b3d8 100644 --- a/README.md +++ b/README.md @@ -61,15 +61,9 @@ omePath can be installed as an R package and run as an R function. You will need ### Install omePath in RStudio ### 1. Install devtools : - * ``> install.packages('devtools')`` - * ``>library(devtools)`` -2. Install the Bioconductor dependencies: - * ``> install.packages('BiocManager'); library('BiocManager');`` - * ``> BiocManager::install('limma')`` -3. Install the CRAN dependencies: - * ``> install.packages(c('future', 'downloader', 'reader', 'backports', 'gsEasy','pscl','pbapply','car','nlme','dplyr','vegan','chemometrics','ggplot2','pheatmap','cplm','hash','logging','data.table'), repos='http://cran.r-project.org')`` -4. Install omePath (and also all dependencies from CRAN): - * ``> devtools::install_github('omicsEye/omePath', force = TRUE)`` + * ``install.packages('devtools')`` +2. Install omePath (and also all dependencies from CRAN and Bioconductor): + * ``devtools::install_github('omicsEye/omePath', force = TRUE)`` ### Download the mapping database ###